11 projects
pycytominer
Python package for processing image-based profiling data
cytotable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
cytodataframe
An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
nviz
A tool for creating and visualizing n-dimensional microscopy images.
cosmicqc
coSMicQC is a software tool for single-cell quality control of morphology datasets.
pairwise-compare
Allows the user to compare groups of data specified in a tidy pandas dataframe with ease.
zedprofiler
CPU-first handcrafted 3D featurization toolkit for high-throughput profiling
ome-arrow
Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.
napari-ome-arrow
A Napari plugin for OME-Arrow and OME-Parquet bioimage data
iceberg-bioimage
A format-agnostic framework for cataloging and querying bioimaging data (Zarr, OME-TIFF) with Apache Iceberg
buscar
A Python framework for prioritizing compounds in high-content imaging drug screening using single-cell profiles.
