A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

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  • License: MIT License
  • Author: Das Lab
  • Tags RNA , RNA structure prediction , Bioinformatics
  • Requires: Python >=3.7
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Project description

arnie

Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.

Documentation

See our full docs.

Install

arnie is available on PyPI.

pip install arnie

Repo Organization

src/arnie: source code for the arnie package.

docs: docsify-based markdown documentation for the arnie package.

tests: unit tests

notebooks: example jupyter notebooks with usage.

scripts: scripts for processing sequences in batch.

parameter_files: dir of various parameter files for packages, put here out of convenience.

(c) 2024 Leland Stanford Jr University Authors: Hannah Wayment-Steele

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  • License: MIT License
  • Author: Das Lab
  • Tags RNA , RNA structure prediction , Bioinformatics
  • Requires: Python >=3.7
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