Pgenlib 0.81.1

Python wrapper for pgenlib's basic reader and writer.

This provides a basic Python API for pgenlib (See python_api.txt for details.)

Build this with this.

Cython and NumPy must be installed.

python3 setup.py build_ext
[sudo] python3 setup.py install

Example usage:

#write a 2 sample file
import numpy as np
import pgenlib as pg

with pg.PgenWriter("test.pgen".encode("utf-8"), 2, 3, False) as writer:
	writer.append_alleles(np.array([0,1,1,1],dtype=np.int32))
	writer.append_alleles(np.array([0,1,0,0],dtype=np.int32))
	writer.append_alleles(np.array([0,0,0,0],dtype=np.int32))