Python wrapper for pgenlib's basic reader and writer.
Project description
This provides a basic Python API for pgenlib (See python_api.txt for details.)
Build this with this.
Cython and NumPy must be installed.
python3 setup.py build_ext
[sudo] python3 setup.py install
Example usage:
#write a 2 sample file
import numpy as np
import pgenlib as pg
with pg.PgenWriter("test.pgen".encode("utf-8"), 2, 3, False) as writer:
writer.append_alleles(np.array([0,1,1,1],dtype=np.int32))
writer.append_alleles(np.array([0,1,0,0],dtype=np.int32))
writer.append_alleles(np.array([0,0,0,0],dtype=np.int32))
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Pgenlib-0.81.1.tar.gz
(384.5 kB
view hashes)