RNAvigate

RNAvigate is a toolset to explore, compare, and visualize chemical probing data, structure models, and annotations between experimental samples.

For non-coders, RNAvigate is designed to be easy to learn. Reach out to me if you want help onboarding for your group. Using RNAvigate in a Jupyter Notebook will transform how you explore data, document thoughts, and share transparent and reproducible analyses.

For coders, RNAvigate is extremely flexible and a great package for scripting and standardizing plots and analyses as part of a bigger workflow.

• Click here for the full documentation

Reach out

Coders and non-coders, reach out if you have any comments or issues at all! I love to help users and to learn how you are using this tool. I may be open to working with you on bigger projects or features.

Please, use GitHub Issues liberally or email me. "Issues" can be:

• a "dumb" question (my favorite kind) or a complicated one.
• any comment or suggestion for the documentation or the code.
• a cool thing that you did with RNAvigate.
• an actual issue, such as a bug or an unclear error
• a request for help:
  • acheiving a desired vizualization or analysis
  • performing a chemical probing experiment
• a feature request, such as:
  • handling a new file format
  • creating a new kind visualization