Skip to main content

RNA visualization and graphical analysis toolset

Project description

RNAvigate

RNAvigate is a toolset to explore, compare, and visualize chemical probing data, structure models, and annotations between experimental samples.

For non-coders, RNAvigate is designed to be easy to learn. Reach out to me if you want help onboarding for your group. Using RNAvigate in a Jupyter Notebook will transform how you explore data, document thoughts, and share transparent and reproducible analyses.

For coders, RNAvigate is extremely flexible and a great package for scripting and standardizing plots and analyses as part of a bigger workflow.

Reach out

Coders and non-coders, reach out if you have any comments or issues at all! I love to help users and to learn how you are using this tool.

Please, use GitHub Issues liberally or email me. "Issues" can be:

  • a "dumb" question (my favorite kind) or a complicated one.
  • any comment or suggestion for the documentation or the code.
  • a cool thing that you did with RNAvigate.
  • a report of a bug or unclear error.
  • a request for help on acheiving a desired vizualization or analysis.
  • a request for advice on any chemical probing matter.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

rnavigate-1.1.0.tar.gz (126.3 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

rnavigate-1.1.0-py3-none-any.whl (152.1 kB view details)

Uploaded Python 3

File details

Details for the file rnavigate-1.1.0.tar.gz.

File metadata

  • Download URL: rnavigate-1.1.0.tar.gz
  • Upload date:
  • Size: 126.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: uv/0.11.16 {"installer":{"name":"uv","version":"0.11.16","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"13","id":"trixie","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}

File hashes

Hashes for rnavigate-1.1.0.tar.gz
Algorithm Hash digest
SHA256 1a531bc92cf9cb331576642633b525f7f8963872025889754f21b2585f2fd3bf
MD5 a761d00469a8bbcc0244e8ab6cc0761e
BLAKE2b-256 bdcd469019500af2e08eff70ba94333047f287eb15e0667058aeb10b56512f86

See more details on using hashes here.

File details

Details for the file rnavigate-1.1.0-py3-none-any.whl.

File metadata

  • Download URL: rnavigate-1.1.0-py3-none-any.whl
  • Upload date:
  • Size: 152.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: uv/0.11.16 {"installer":{"name":"uv","version":"0.11.16","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"13","id":"trixie","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}

File hashes

Hashes for rnavigate-1.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 990b624e787896eaa03d207152910c4d46b1a780db6c3eab53a5405c8ccd2a2a
MD5 2b33c70294bcb542a8b0ceb337fab992
BLAKE2b-256 941c0c1a53b429a73e9c74c7690db851424bb9d33ba2f522934bc668793df611

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page