TaxSEA-in-python 0.1.3

A small package for converting bacterial names into NCBI IDs

TaxSEA_in_python project

This package is a version of TaxSEA but build in python.

Installation

pip install TaxSEA_in_python

Usage

# TaxSEA_in_python is the python based tools imported from the tool TaxSEA based in R language.
from TaxSEA_in_python.TaxSEA import TaxSEA

# Locating the test data: 
from importlib.resources import files 
TaxSEA_test_data = str(files('TaxSEA_in_python.data').joinpath('TaxSEA_test_data.csv'))

# TaxSEA main code: 
TaxSEA_test_results = TaxSEA(TaxSEA_test_data) # The output is a dictionary of 3 dataframes
print(TaxSEA_test_results) 

# Calling the 3 dataframes in TaxSEA_test_results: 
Metabolite_producers = TaxSEA_test_results["Metabolite_producers"]

BugSigdB = TaxSEA_test_results["BugSigdB"]

Health_associations = TaxSEA_test_results["Health_associations"]

"""