TaxSEA-in-python 0.1.4

A small package for converting bacterial names into NCBI IDs

TaxSEA_in_python project

This package is a version of TaxSEA but build in python.

Installation

pip install TaxSEA_in_python

Usage

# Import the Python-based implementation of TaxSEA, originally developed as an R tool.
from TaxSEA_in_python.TaxSEA import TaxSEA

# Locate the test data file within the package.
from importlib.resources import files 
TaxSEA_test_data = str(files('TaxSEA_in_python.data').joinpath('TaxSEA_test_data.csv'))

# Run the TaxSEA function on the test data.
# Optionally, you can specify an output location for the results by providing the `Output_location` argument.
# Example: TaxSEA(TaxSEA_test_data, Output_location='file/path')
TaxSEA_test_results = TaxSEA(TaxSEA_test_data)
print(TaxSEA_test_results)

# Access the three DataFrames returned in the TaxSEA_test_results dictionary.
Metabolite_producers = TaxSEA_test_results["Metabolite_producers"]
BugSigdB = TaxSEA_test_results["BugSigdB"]
Health_associations = TaxSEA_test_results["Health_associations"]

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