Skip to main content

tile phylogenetic space with subtrees

Project description

al·pha·bet soup /ˈalfəˌbet so͞op/Submit noun INFORMAL incomprehensible or confusing language, typically containing many abbreviations or symbols.

alphabetsoup fixes problems with protein FASTA files: +————————–+————————+ | Problem | Fix | +————————–+————————+ | Unknown character | Replaces with ‘X’ | +————————–+————————+ | Stop/ambigous at ends | Trims | +————————–+————————+ | Stop/ambiguous in middle | Optionally fragments | +————————–+————————+ | Too short | Deletes record | +————————–+————————+

Latest Release

Python package

Alphabet Soup Definition


GitHub repository


License terms


Documentation Server

Travis Build

Travis CI

Coverage test coverage

Pythonicity status

Code Grade grade

Dependencies dependencies


Issues reported


Powered by ZenHub

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

alphabetsoup-0.5.3.tar.gz (14.3 kB view hashes)

Uploaded source

Built Distribution

alphabetsoup-0.5.3-py3-none-any.whl (13.3 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page