anchors

Python package for calculating scores from ancnchor or modifier screens

Free software: MIT license
Documentation: https://anchors.readthedocs.io.

Tutorial

To install:

$ pip install anchors

Basic Usage

import pandas as pd
from anchors import get_guide_residuals, get_gene_residuals
lfc_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/parp_example_lfcs.csv')
refernce_condition_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/parp_example_mapping.csv')
guide_residuals, model_info, model_fit_plots = get_guide_residuals(lfc_df, refernce_condition_df)
guide_mapping_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/brunello_guide_map.csv')
gene_residuals = get_gene_residuals(guide_residuals, guide_mapping_df)

Features

TODO

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.0 (2020-09-21)

First release on PyPI.

0.3.0 (2020-09-21)

Calculate guide and gene residuals.

Development Status
- 2 - Pre-Alpha
Intended Audience
- Developers
License
- OSI Approved :: MIT License
Natural Language
- English
Programming Language

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