A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
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arnie
Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.
Documentation
Install
arnie is available on PyPI.
pip install arnie
Repo Organization
src/arnie: source code for the arnie package.
docs: docsify-based markdown documentation for the arnie package.
tests: unit tests
notebooks: example jupyter notebooks with usage.
scripts: scripts for processing sequences in batch.
parameter_files: dir of various parameter files for packages, put here out of convenience.
(c) 2024 Leland Stanford Jr University Authors: Hannah Wayment-Steele
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