A converter from .bam to .png for specific genomic region.
Project description
BamSnap
BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files
For more details, see BamSnap Documentation.
Installation
Prerequisites
- python 3.4+
- Pillow (Python Imaging Library)
- pysam
- pyfaidx
- pytabix
Install with pip
pip install bamsnap
Install with github
git clone https://github.com/parklab/bamsnap
cd bamsnap
python setup.py install
Usage
Simple usage
$ bamsnap -bam test.bam -pos 1:7364529 -out test.png
For more details, see BamSnap Documentation.
Example Use Case
- 1000 Genome Data: 1000 genomic loci in 2504 individuals
- BamSnap Plot Gallery
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