Skip to main content

pysam

Project description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for pysam, version 0.18.0
Filename, size File type Python version Upload date Hashes
Filename, size pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (3.2 MB) File type Wheel Python version cp310 Upload date Hashes View
Filename, size pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (15.1 MB) File type Wheel Python version cp310 Upload date Hashes View
Filename, size pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.6 MB) File type Wheel Python version cp310 Upload date Hashes View
Filename, size pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (3.1 MB) File type Wheel Python version cp36 Upload date Hashes View
Filename, size pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (14.5 MB) File type Wheel Python version cp36 Upload date Hashes View
Filename, size pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.0 MB) File type Wheel Python version cp36 Upload date Hashes View
Filename, size pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (3.1 MB) File type Wheel Python version cp37 Upload date Hashes View
Filename, size pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (14.4 MB) File type Wheel Python version cp37 Upload date Hashes View
Filename, size pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (14.9 MB) File type Wheel Python version cp37 Upload date Hashes View
Filename, size pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (3.1 MB) File type Wheel Python version cp38 Upload date Hashes View
Filename, size pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (15.6 MB) File type Wheel Python version cp38 Upload date Hashes View
Filename, size pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (16.2 MB) File type Wheel Python version cp38 Upload date Hashes View
Filename, size pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (3.2 MB) File type Wheel Python version cp39 Upload date Hashes View
Filename, size pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (15.1 MB) File type Wheel Python version cp39 Upload date Hashes View
Filename, size pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.6 MB) File type Wheel Python version cp39 Upload date Hashes View
Filename, size pysam-0.18.0.tar.gz (3.8 MB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page