pysam
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Project description
pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
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| Filename, size & hash SHA256 hash help | File type | Python version | Upload date |
|---|---|---|---|
| pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (8.9 MB) Copy SHA256 hash SHA256 | Wheel | cp27 | |
| pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (8.9 MB) Copy SHA256 hash SHA256 | Wheel | cp27 | |
| pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (9.6 MB) Copy SHA256 hash SHA256 | Wheel | cp34 | |
| pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (9.5 MB) Copy SHA256 hash SHA256 | Wheel | cp35 | |
| pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (9.6 MB) Copy SHA256 hash SHA256 | Wheel | cp36 | |
| pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (9.5 MB) Copy SHA256 hash SHA256 | Wheel | cp37 | |
| pysam-0.15.2.tar.gz (3.2 MB) Copy SHA256 hash SHA256 | Source | None |
