This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
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Project Description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

The current version wraps htslib-1.3.1, samtools-1.3.1 and bcftools-1.3.1.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Release History

Release History

0.9.1.4

This version

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0.9.1.3

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0.9.1.2

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0.9.1.1

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0.9.1

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0.9.0

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0.8.4

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0.8.3

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0.8.2.1

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0.8.2

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0.8.1

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0.8.0

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0.7.8

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0.7.7

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0.7.6

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0.7.5

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0.7.4

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0.7.3

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0.7.2

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0.7.1

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0.7

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0.6

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0.4.1

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0.4

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0.3.1

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0.3

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Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
pysam-0.9.1.4.tar.gz (2.2 MB) Copy SHA256 Checksum SHA256 Source Jul 18, 2016

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