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pysam

Project Description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Release History

This version
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0.14

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0.13

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0.12.0.1

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0.12

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0.11.2.2

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0.11.2.1

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0.11.2

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0.11.1

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0.11

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0.10.0

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0.9.1.4

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0.9.1.3

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0.9.1.2

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0.9.1.1

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0.9.1

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0.9.0

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0.8.4

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0.8.3

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0.8.2.1

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0.8.2

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0.8.1

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0.8.0

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0.7.8

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0.7.7

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0.7.6

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0.7.5

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0.7.4

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0.7.3

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0.7.2

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0.7.1

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0.7

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0.6

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0.4.1

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0.4

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0.3.1

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0.3

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Filename, Size & Hash SHA256 Hash Help File Type Python Version Upload Date
pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl
(8.9 MB) Copy SHA256 Hash SHA256
Wheel cp27 Feb 9, 2018
pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl
(8.9 MB) Copy SHA256 Hash SHA256
Wheel cp27 Feb 9, 2018
pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl
(9.7 MB) Copy SHA256 Hash SHA256
Wheel cp34 Feb 9, 2018
pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl
(9.5 MB) Copy SHA256 Hash SHA256
Wheel cp35 Feb 9, 2018
pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl
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Wheel cp36 Feb 9, 2018
pysam-0.14.tar.gz
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Source None Feb 9, 2018

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