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Project Description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

The current version wraps htslib-1.4.1, samtools-1.4.1 and bcftools-1.4.1.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Release History

Release History

0.11.2.1

This version

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0.11.2

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0.11.1

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0.11

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0.10.0

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0.9.1.4

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0.9.1.3

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0.9.1.2

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0.9.1.1

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0.9.1

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0.9.0

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0.8.4

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0.8.3

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0.8.2.1

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0.8.2

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0.8.1

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0.8.0

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0.7.8

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0.7.7

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0.7.6

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0.7.5

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0.7.4

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0.7.3

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0.7.2

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0.7.1

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0.7

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0.6

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0.4.1

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0.4

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0.3.1

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0.3

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Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (7.8 MB) Copy SHA256 Checksum SHA256 cp27 Wheel May 16, 2017
pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (7.8 MB) Copy SHA256 Checksum SHA256 cp27 Wheel May 16, 2017
pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (8.5 MB) Copy SHA256 Checksum SHA256 cp34 Wheel May 16, 2017
pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (8.3 MB) Copy SHA256 Checksum SHA256 cp35 Wheel May 16, 2017
pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (8.4 MB) Copy SHA256 Checksum SHA256 cp36 Wheel May 16, 2017
pysam-0.11.2.1.tar.gz (2.5 MB) Copy SHA256 Checksum SHA256 Source May 13, 2017

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