Package for reading, manipulating, and writing genomic data

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  • License: OSI Approved (MIT License)
  • Author: Andreas Heger
  • Requires: Python >=3.8
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Project description

pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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  • License: OSI Approved (MIT License)
  • Author: Andreas Heger
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This version

0.23.3

0.23.2

0.23.1 yanked

Reason this release was yanked:

Pysam 0.23.1 broke binary compatibility for Cython projects.

0.23.0

0.22.1

0.22.0

0.21.0

0.20.0

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.1

0.14

0.13

0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

0.8.3

0.8.2.1

0.8.2

0.8.1

0.8.0

0.7.8

0.7.7

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

0.4

0.3.1

0.3

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