pysam
pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.4.1, samtools-1.4.1 and bcftools-1.4.1.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
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| File Name & Checksum SHA256 Checksum Help | Version | File Type | Upload Date |
|---|---|---|---|
| pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (7.8 MB) Copy SHA256 Checksum SHA256 | cp27 | Wheel | Jun 8, 2017 |
| pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (7.8 MB) Copy SHA256 Checksum SHA256 | cp27 | Wheel | Jun 8, 2017 |
| pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (8.5 MB) Copy SHA256 Checksum SHA256 | cp34 | Wheel | Jun 8, 2017 |
| pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (8.3 MB) Copy SHA256 Checksum SHA256 | cp35 | Wheel | Jun 8, 2017 |
| pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (8.4 MB) Copy SHA256 Checksum SHA256 | cp36 | Wheel | Jun 8, 2017 |
| pysam-0.11.2.2.tar.gz (2.5 MB) Copy SHA256 Checksum SHA256 | – | Source | Jun 8, 2017 |
