Package for reading, manipulating, and writing genomic data

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  • License: OSI Approved (MIT License)
  • Author: Andreas Heger
  • Requires: Python >=3.6
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pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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  • License: OSI Approved (MIT License)
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0.23.0

0.22.1

This version

0.22.0

0.21.0

0.20.0

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

0.15.4

0.15.3

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0.15.1

0.15.0

0.14.1

0.14

0.13

0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

0.8.3

0.8.2.1

0.8.2

0.8.1

0.8.0

0.7.8

0.7.7

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

0.4

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