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Simulate DNA band patterns for gel migration experiments

Project description

Bandwagon (full documentation here) is a Python library to predict and plot migration patterns from DNA digestions. It supports hundreds of different enzymes (thanks to BioPython), single- and multiple-enzymes digestions, and custom ladders.

It uses Matplotlib to produce plots like this one:

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/BandWagon/master/examples/mixed_digestions.png

Infos

PIP installation:

pip install bandwagon

Web documentation:

https://edinburgh-genome-foundry.github.io/bandwagon/

Github Page

https://github.com/Edinburgh-Genome-Foundry/bandwagon

Live demo

https://cuba.genomefoundry.org/predict-digestions

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

Bandwagon is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details


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Files for bandwagon, version 0.1.7
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Filename, size bandwagon-0.1.7.tar.gz (22.4 kB) File type Source Python version None Upload date Hashes View hashes

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