Snakemake pipeline for Mars-seq and RNA-seq.
This project is currently using Python 2.7
It is recommended to use virtualenv to create a clean python environment.
To install ngs-snakemake, use pip:
pip install bbcu.ngs-snakemake
To run unit tests, use:
This suite includes both unit and more time-consuming integration tests
The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706