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Snakemake pipeline for Mars-seq and RNA-seq.

Project description

Python version

This project is currently using Python 2.7


It is recommended to use virtualenv to create a clean python environment.

To install ngs-snakemake, use pip:

pip install bbcu.ngs-snakemake


To run unit tests, use:




This suite includes both unit and more time-consuming integration tests


The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here:

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bbcu.ngs-snakemake-1.0.68.tar.gz (205.3 kB view hashes)

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