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Snakemake pipeline for Mars-seq and RNA-seq.

Project description

Python version

This project is currently using Python 2.7

Installation

It is recommended to use virtualenv to create a clean python environment.

To install ngs-snakemake, use pip:

pip install bbcu.ngs-snakemake

Testing

To run unit tests, use:

nosetests

Or:

tox

This suite includes both unit and more time-consuming integration tests

Execution

The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706

Project details


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