A package for parsing and storing the ExPASy Enzyme Database
Project description
This repository downloads and parses the enzyme classes from the ExPASy ENZYME database
Installation
![Apache 2.0 License](https://pypi-camo.freetls.fastly.net/4d27af3433337b765f29d829aff5471ad47db8ac/68747470733a2f2f696d672e736869656c64732e696f2f707970692f6c2f62696f3262656c5f6578706173792e737667)
Download the latest stable code from PyPI with:
$ python3 -m pip install bio2bel_expasy
or check the installation instructions.
Command Line Interface
To output the hierarchy of enzyme classes, type the following in the command line:
bio2bel_expasy write -f ~/Desktop/ec.bel
Programmatic Interface
To enrich the proteins in a BEL Graph with their enzyme classes, use:
>>> from bio2bel_expasy import enrich_proteins >>> graph = ... # get a BEL graph >>> enrich_proteins(graph)
Citations
Gasteiger, E., et al. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31(13), 3784–8.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bio2bel_expasy-0.1.1.tar.gz
(19.6 kB
view hashes)
Built Distribution
Close
Hashes for bio2bel_expasy-0.1.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ede01381311f32bb53d7371827f86b6b58886b964304c3267a11040704626475 |
|
MD5 | fb931b404af4941707a2a722720b61e0 |
|
BLAKE2b-256 | 8f7a71c3560d5162f0114f9e312121bb13613baf44a67297dca2b492d86d9e2b |