A package for converting Wikipathways to BEL
Project description
This package converts WikiPathways to BEL. At the moment, the package parse, store, and export to a namespace all Homo sapiens pathways. Furthermore, a small wrapper around the database allows to explore through a Flask-admin interface the database and perform simple queries.
Installation
This code can be installed with pip3 install git+https://github.com/bio2bel/wikipathways.git
Citation
Slenter, D.N., et al WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research Nucleic Acids Research, (2017)doi.org/10.1093/nar/gkx1064
Kutmon, M., et al. WikiPathways: capturing the full diversity of pathway knowledge Nucl. Acids Res., 44, D488-D494 (2016) doi:10.1093/nar/gkv1024
Kelder, T., et al. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7
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- Download URL: bio2bel_wikipathways-0.0.1.tar.gz
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