bioimageflow-io-tools
Optional BioImageFlow package for image ingestion, metadata inspection, axis validation, slicing, lightweight format conversion, and explicit bioio/plugin-backed conversion.
Core libraries for lightweight tools are imageio, NumPy, and tifffile.
BioIOConvertImage and ConvertToOmeZarr declare a separate pinned BioIO/plugin-backed runtime for broad microscopy formats and maintained OME-Zarr writing.
Tools
ReadImageMetadataValidateImageLayoutConvertImageFormatBioIOConvertImageConvertToOmeTiffConvertToOmeZarrSelectSceneSelectTimepointSelectChannelSelectZRangeSelectDimensions
Use BioIOConvertImage for microscopy formats that need scene, channel, Z, timepoint, or dimension-order handling.
Use ConvertImageFormat only for ordinary imageio conversions.
Use the dedicated OME-TIFF and OME-Zarr tools for OME output; they use reader-provided axes when unambiguous and otherwise require dimension_order.
1 maintainer
Metadata
1 maintainer
Release files for bioimageflow-io-tools 0.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| bioimageflow_io_tools-0.2.0.tar.gz | 20.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimageflow_io_tools-0.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.7 kB
Release files / bioimageflow_io_tools-0.2.0.tar.gz
| Download URL | bioimageflow_io_tools-0.2.0.tar.gz |
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| Size | 20.6 kB |
| Tags | Source |
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uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
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Release files / bioimageflow_io_tools-0.2.0-py3-none-any.whl
| Download URL | bioimageflow_io_tools-0.2.0-py3-none-any.whl |
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| Size | 16.1 kB |
| Tags | Python 3 |
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uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
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