bioimageflow-measurement-tools
Optional BioImageFlow package for object measurements, label counting, table summaries, and segmentation benchmark metrics.
Core libraries: imageio, NumPy, pandas, and BioImageFlow's ProcessingTool and
DataFrameTool APIs. The package should grow toward a compact CellProfiler-like
measurement layer while keeping deterministic public tests.
Tools
RegionPropertiesShapePropertiesIntensityPropertiesCountLabelsSummarizeTableLabelBenchmarkObjectMatchingMetricsDiceIoUAggregatePerImageNormalizeFeatures
Tests
Run package tests with:
uv run pytest packages/bioimageflow-measurement-tools/tests
The tests use generated label images, intensity images, and tables with exact expected values. Public-data workflow tests should assert stable ranges rather than commit large datasets.
1 maintainer
Metadata
1 maintainer
Release files for bioimageflow-measurement-tools 0.1.8
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Source distribution (sdist)
| File | Size | Uploaded | |
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| bioimageflow_measurement_tools-0.1.8.tar.gz | 13.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimageflow_measurement_tools-0.1.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 22.7 kB
Release files / bioimageflow_measurement_tools-0.1.8.tar.gz
| Download URL | bioimageflow_measurement_tools-0.1.8.tar.gz |
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| Size | 13.9 kB |
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Release files / bioimageflow_measurement_tools-0.1.8-py3-none-any.whl
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| Size | 8.8 kB |
| Tags | Python 3 |
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uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
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