bioimageflow-measurement-tools
Optional BioImageFlow package for object measurements, label counting, table summaries, and segmentation benchmark metrics.
Core libraries: imageio, NumPy, pandas, and BioImageFlow's ProcessingTool and
DataFrameTool APIs. The package should grow toward a compact CellProfiler-like
measurement layer while keeping deterministic public tests.
Tools
RegionPropertiesShapePropertiesIntensityPropertiesCountLabelsSummarizeTableLabelBenchmarkObjectMatchingMetricsDiceIoUAggregatePerImageNormalizeFeatures
Tests
Run package tests with:
uv run pytest packages/bioimageflow-measurement-tools/tests
The tests use generated label images, intensity images, and tables with exact expected values. Public-data workflow tests should assert stable ranges rather than commit large datasets.
1 maintainer
Metadata
1 maintainer
Release files for bioimageflow-measurement-tools 0.1.9
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Source distribution (sdist)
| File | Size | Uploaded | |
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| bioimageflow_measurement_tools-0.1.9.tar.gz | 13.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimageflow_measurement_tools-0.1.9-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 22.7 kB
Release files / bioimageflow_measurement_tools-0.1.9.tar.gz
| Download URL | bioimageflow_measurement_tools-0.1.9.tar.gz |
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| Size | 13.9 kB |
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Release files / bioimageflow_measurement_tools-0.1.9-py3-none-any.whl
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| Size | 8.8 kB |
| Tags | Python 3 |
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