Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License
  • Author: Lamin Labs
  • Requires: Python <3.15, >=3.10
  • Provides-Extra: dev
Classifiers
Report project as malware

Project description

Stars pypi

bionty: Registries for biological ontologies

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications.
  • Manage multiple ontology versions via bionty.Source.

Read the docs.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License
  • Author: Lamin Labs
  • Requires: Python <3.15, >=3.10
  • Provides-Extra: dev
Classifiers

Release history Release notifications | RSS feed

This version

2.4.2

2.4.1

2.4.0

2.3.1

2.3.0

2.3a1 pre-release

2.2.1

2.2.0

2.1.0

2.0.0

2.0a4 pre-release

2.0a3 pre-release

2.0a2 pre-release

2.0a1 pre-release

1.10.0

1.9.1

1.9.0

1.8.1

1.8.0

1.7.0

1.7a1 pre-release

1.6.1

1.6.1rc1 pre-release

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.4a1 pre-release

1.3.2

1.3.1

1.3.0

1.2.1

1.2.0

1.2a1 pre-release

1.1.2

1.1.1

1.1.0

1.0.0

1.0a5 pre-release

1.0a1 pre-release

0.53.2

0.53.1

0.53.0

0.52.1

0.52.0

0.51.2

0.51.1

0.51.0

0.50.2

0.50.1

0.50.0

0.49.1

0.49.0

0.48.3

0.48.2

0.48.1

0.48.0

0.47.1

0.47.0

0.46.0

0.45.0

0.44.3

0.44.2

0.44.1

0.44.0

0.43.1

0.43.0

0.42.11

0.42.10

0.42.9

0.42.8

0.42.7

0.42.6

0.42.5

0.42.4

0.42.3

0.42.2

0.42.1

0.42.0

0.41.1

0.41.0

0.40.3

0.40.2

0.40.1

0.40.0

0.36.0

0.35.2

0.35.1

0.35.0

0.34.3

0.34.2

0.34.1

0.34.0

0.33.1

0.33.0

0.32.0

0.31.2

0.31.1

0.31.0

0.30.3

0.30.2

0.30.1

0.30.0

0.29.0

0.28.0

0.27.0

0.26.0

0.25.2

0.25.1

0.25.0

0.24.2

0.24.1

0.24.0

0.23.1

0.23.0

0.22.0

0.21.4

0.21.3

0.21.2

0.21.1

0.21.0

0.20.0

0.19.1

0.19.0

0.18.1

0.18.0

0.17.0

0.17a3 pre-release

0.17a2 pre-release

0.17a1 pre-release

0.16.0

0.15.1

0.15.0

0.14.0

0.13.5

0.13.4

0.13.3

0.13.2

0.13.1

0.13.0

0.12.1

0.12.0

0.11.6

0.11.5

0.11.4

0.11.3

0.11.2

0.11.1

0.11.0

0.10.1

0.10.0

0.9.0

0.9.0rc1 pre-release

0.8.1

0.8.0

0.8rc3 pre-release

0.8rc2 pre-release

0.8rc1 pre-release

0.7.0

0.6.5

0.6.4

0.6.3

0.6.2

0.6.1

0.6.0

0.5.7

0.5.6

0.5.5

0.5.4

0.5.3

0.5.2

0.5.1

0.5.0

0.4.3

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.2.5

0.2.4

0.2.3

0.2.2

0.2.0

0.1.11

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.1a3 pre-release

0.1a2 pre-release

0.1a1 pre-release

0.0.6

0.0.5

0.0.4

0.0.3

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bionty-2.4.2.tar.gz (83.9 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

bionty-2.4.2-py3-none-any.whl (84.4 kB view details)

Uploaded Python 3

File details

Details for the file bionty-2.4.2.tar.gz.

File metadata

  • Download URL: bionty-2.4.2.tar.gz
  • Upload date:
  • Size: 83.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-requests/2.34.2

File hashes

Hashes for bionty-2.4.2.tar.gz
Algorithm Hash digest
SHA256 2ca49dd9cccbe8931257643229a10b106e09c39cce51784262c05a4e92753c84
MD5 a4116c17dc7e9224042d5c8f3fef7b4a
BLAKE2b-256 54ee87636edfe09ac89f798658ff508be301b7be3434605fac7c1962ab4ce9a9

See more details on using hashes here.

File details

Details for the file bionty-2.4.2-py3-none-any.whl.

File metadata

  • Download URL: bionty-2.4.2-py3-none-any.whl
  • Upload date:
  • Size: 84.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-requests/2.34.2

File hashes

Hashes for bionty-2.4.2-py3-none-any.whl
Algorithm Hash digest
SHA256 0d7add070a8c73488e65023ff7ffbe16ba7a3f3e756e1605fcc202131d067ee5
MD5 c0dd49341d294e7331d87953e22f350e
BLAKE2b-256 0e7d84ca34a7b7a7d337be7e3bf79c3d2ac359e077661176cae56c448d6afae0

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page