Skip to main content

Blendpy uses atomistic simulations with ASE calculators to compute alloy properties like enthalpy of mixing. It supports binary and multicomponent systems, including alloys and pseudoalloys.

Project description

License: MIT PyPI GitHub Downloads (all assets, all releases)

Blendpy uses atomistic simulations with ASE calculators to compute alloy properties like enthalpy of mixing. It supports binary and multicomponent systems, including alloys and pseudoalloys.

Installation

Install blendpy easily using pip, Python’s package manager:

$ pip install blendpy

Getting started

First, import the necessary modules from ASE and MACE:

from ase.io import write
from ase.build import bulk
from ase.optimize import BFGSLineSearch
from ase.filters import UnitCellFilter

Next, create Atoms objects for gold (Au) and platinum (Pt) using the bulk function:

# Create Au and Pt Atoms object
gold = bulk("Au", cubic=True)
platinum = bulk("Pt", cubic=True)

Create a MACE calculator object to optimize the structures:

# Initialize the MACE calculator
from mace.calculators import mace_mp
calc_mace = mace_mp(model="small",
                    dispersion=False,
                    default_dtype="float32",
                    device='cpu')

Assign the calculator to the Atoms objects:

# Assign the calculator to the Atoms objects
gold.calc = calc_mace
platinum.calc = calc_mace

Optimize the unit cells of Au and Pt using the BFGSLineSearch optimizer:

# Optimize Au and Pt unit cells
optimizer_gold = BFGSLineSearch(UnitCellFilter(gold))
optimizer_gold.run(fmax=0.01)

optimizer_platinum = BFGSLineSearch(UnitCellFilter(platinum))
optimizer_platinum.run(fmax=0.01)

Save the optimized unit cells to CIF files:

# Save the optimized unit cells for Au and Pt
write("Au.cif", gold)
write("Pt.cif", platinum)

Now, import the DSIModel from blendpy and create a DSIModel object using the optimized structures:

from blendpy import DSIModel

# Create a DSIModel object
blendpy = DSIModel(alloy_components = ['Au.cif', 'Pt.cif'],
                   supercell = [2,2,2],
                   calculator = calc_mace)

Optimize the structures within the DSIModel object:

# Optimize the structures
blendpy.optimize(method=BFGSLineSearch, fmax=0.01, logfile=None)

Calculate the enthalpy of mixing for the AuPt alloy:

# Calculate the enthalpy of mixing
enthalpy_of_mixing = blendpy.get_enthalpy_of_mixing(npoints=101)

Plotting the enthalpy of mixing

import numpy as np
import matplotlib.pyplot as plt

fig, ax = plt.subplots(1,1, figsize=(5,5))

x = np.linspace(0, 1, 101)
ax.set_xlabel("$x$", fontsize=20)
ax.set_ylabel("$\Delta H_{mix}$ (kJ/mol)", fontsize=20)
ax.set_xlim(0,1)
ax.set_ylim(-7,7)
ax.set_xticks(np.linspace(0,1,6))
ax.set_yticks(np.arange(-6,7,2))

# Plot the data
ax.plot(x, enthalpy_of_mixing, color='#d53e4f', linewidth=3, zorder=2)
ax.scatter(x[::10], enthalpy_of_mixing[::10], color='#d53e4f', s=80, zorder=2, label="Au$_{1-x}$Pt$_{x}$")

# Reference: H. Okamoto and T.B. Massalski, Bull. Alloy Phase Diagrams 1 (1985) 46.
df_exp = pd.read_csv("data/experimental/exp_AuPt.csv")
ax.plot(df_exp['x'][::2], df_exp['enthalpy'][::2], 's', color='#000000', markersize=8, label="Exp. Data", zorder=1)
ax.legend(loc="best", fontsize=16)

ax.tick_params(direction='in', axis='both', which='major', labelsize=20, width=3, length=8)
ax.set_box_aspect(1)
for spine in ax.spines.values():
    spine.set_linewidth(3)

plt.tight_layout()
# plt.savefig("enthalpy_of_mixing.png", dpi=600, format='png', bbox_inches='tight') # uncomment this if you want to save the figure
plt.show()

Figure 1 - Enthalpy of mixing of the Au-Pt alloy computed using the DSI model and MACE interatomic potentials.

Phase diagram

By analyzing the mixing enthalpies and entropies, we can calculate the Gibbs free energy of the Au–Pt alloy mixture and determine both the spinodal and binodal (solvus) decomposition curves. These curves, which form key features of the alloy's phase diagram, delineate regions of differing stability: below the binodal curve, the solid solution (Au, Pt) is metastable, whereas it becomes unstable beneath the spinodal curve.

We begin by defining a temperature range over which to calculate the spinodal and binodal curves. Optionally, the results can be saved in CSV files.

temperatures = np.arange(300, 3001, 5)

# spinodal curve
df_spinodal = blendpy.get_spinodal_decomposition(temperatures = temperatures, npoints = 501)
df_spinodal.to_csv("data/phase_diagram/spinodal_AuPt.csv", index=False, header=True, sep=',')

# binodal curve
df_binodal = blendpy.get_binodal_curve(temperatures = temperatures, npoints=501)
df_binodal.to_csv("data/phase_diagram/binodal_AuPt.csv", index=False, header=True, sep=',')

To plot the phase diagram featuring the spinodal and binodal decomposition curves, we proceed as follows:

import pandas as pd

# Create figure and axis
fig, ax = plt.subplots(1,1, figsize=(8,8))

x = np.linspace(0, 1, 101)

# Configure axis labels and limits
ax.set_xlabel("$x$", fontsize=20)
ax.set_ylabel("$T$ (K)", fontsize=20)
ax.set_xlim(0,1)
ax.set_ylim(300, 2500)
ax.set_xticks(np.linspace(0,1,6))

# Plot the data
ax.plot(df_spinodal['x'], df_spinodal['t'], color='#d53e4f', linestyle='--', linewidth=3, label="Spinodal curve")
ax.plot(df_binodal['x'], df_binodal['t'], color='#d53e4f', linewidth=3, label="Binodal curve")

# Fill below the curves with transparency (alpha=0.3 means 30% opacity)
ax.fill_between(df_spinodal['x'], df_spinodal['t'], 300, color='#d53e4f', alpha=0.3)
ax.fill_between(df_binodal['x'], df_binodal['t'], 300, color='#d53e4f', alpha=0.3)
ax.legend(loc="best", fontsize=20)

# Add text annotations
ax.text(0.2, 1500, "Stable", fontsize=20, ha='center', va='center')
ax.text(0.4, 950, "Metastable", fontsize=20, ha='center', va='center', rotation=60)
ax.text(0.7, 700, "Unstable", fontsize=20, ha='center', va='center')

# Customize tick parameters
ax.tick_params(direction='in', axis='both', which='major', labelsize=20, width=3, length=8)
ax.set_box_aspect(1)
for spine in ax.spines.values():
    spine.set_linewidth(3)

plt.tight_layout()
# plt.savefig("phase_diagram.png", dpi=600, format='png', bbox_inches='tight') # uncomment this if you want to save the figure
plt.show()

Figure 2 - Phase diagram of the Au–Pt alloy computed using the DSI model and MACE interatomic potentials.

Enthalpy of mixing with polymorphism

# TODO: 

License

This is an open source code under MIT License.

Acknowledgements

We thank financial support from FAPESP (Grant No. 2022/14549-3), INCT Materials Informatics (Grant No. 406447/2022-5), and CNPq (Grant No. 311324/2020-7).

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

blendpy-25.3.8.tar.gz (786.8 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

blendpy-25.3.8-py3-none-any.whl (23.3 kB view details)

Uploaded Python 3

File details

Details for the file blendpy-25.3.8.tar.gz.

File metadata

  • Download URL: blendpy-25.3.8.tar.gz
  • Upload date:
  • Size: 786.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.12.7

File hashes

Hashes for blendpy-25.3.8.tar.gz
Algorithm Hash digest
SHA256 fa8b4a04cefe69ccde67e77ff4b8713113a8826756928579f918ae0faf5af22c
MD5 10d68c4f268cdc61674f4788fefb6104
BLAKE2b-256 74ea34ced7e91c5ab291e45ebf55a434a0890686d8b156fb92da40800f1af12e

See more details on using hashes here.

File details

Details for the file blendpy-25.3.8-py3-none-any.whl.

File metadata

  • Download URL: blendpy-25.3.8-py3-none-any.whl
  • Upload date:
  • Size: 23.3 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.12.7

File hashes

Hashes for blendpy-25.3.8-py3-none-any.whl
Algorithm Hash digest
SHA256 9b7fbdf98ea2890e2e15fffea1625ed4173594d18376411777c08132c9aa89d2
MD5 7b309d0dc7d2ff73d33ed4a03aa1934a
BLAKE2b-256 efbdfb45fefa1f1d55d7200a5a2e92b353faea095e63b80f0aa8cf87d55fc197

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page