brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
Installation
PyPI
pip install brainglobe-segmentation
conda
conda install -c conda-forge brainglobe-segmentation
N.B. Your data will need to be registered to an anatomical atlas first.
Usage
See user guide.
Seeking help or contributing
We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.
Citing brainglobe-segmentation
If you find brainglobe-segmentation useful, and use it in your research, please let us know and also cite the paper:
Tyson, A. L., Vélez-Fort, M., Rousseau, C. V., Cossell, L., Tsitoura, C., Lenzi, S. C., Obenhaus, H. A., Claudi, F., Branco, T., Margrie, T. W. (2022). Accurate determination of marker location within whole-brain microscopy images. Scientific Reports, 12, 867 doi.org/10.1038/s41598-021-04676-9
2 maintainers
Metadata
2 maintainers
Release files for brainglobe-segmentation 1.3.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| brainglobe_segmentation-1.3.3.tar.gz | 24.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| brainglobe_segmentation-1.3.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 50.5 kB
Release files / brainglobe_segmentation-1.3.3.tar.gz
| Download URL | brainglobe_segmentation-1.3.3.tar.gz |
|---|---|
| Size | 24.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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No |
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twine/6.1.0 CPython/3.12.9
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Release files / brainglobe_segmentation-1.3.3-py3-none-any.whl
| Download URL | brainglobe_segmentation-1.3.3-py3-none-any.whl |
|---|---|
| Size | 26.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
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