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A napari plugin to render BrainGlobe atlases and associated data as layers.

Project description

brainrender-napari

License BSD-3 PyPI Python Version tests codecov napari hub

Visualisation and management of BrainGlobe atlases in napari.


A napari plugin to visualise and manage BrainGlobe atlases. brainrender-napari aims to port the functionality of brainrender to napari. add-region-brainrender-napari

Usage

Check out the "Visualising an atlas in napari" tutorial in the BrainGlobe documentation.

Installation

We strongly recommend to use a virtual environment manager (like conda or venv). The installation instructions below will not specify the Qt backend for napari, and you will therefore need to install that separately. Please see the napari installation instructions for further advice on this.

You can install brainrender-napari via pip:

pip install brainrender-napari

To install latest development version :

pip install git+https://github.com/brainglobe/brainrender-napari.git

Contributing

Contributions are very welcome. Have a look at our developer conventions for more info. The core development team is happy to help and advise anyone wanting to contribute!

License

Distributed under the terms of the BSD-3 license, "brainrender-napari" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Acknowledgements

This @napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template and the Neuroinformatics Unit's template.

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