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A collection sklearn transformers to encode categorical variables as numeric

Project description

Categorical Encoding Methods

Test Suite and Linting DOI

A set of scikit-learn-style transformers for encoding categorical variables into numeric by means of different techniques.

Important Links

Documentation: http://contrib.scikit-learn.org/category_encoders/

Encoding Methods

Unsupervised:

  • Backward Difference Contrast [2][3]
  • BaseN [6]
  • Binary [5]
  • Count [10]
  • Hashing [1]
  • Helmert Contrast [2][3]
  • Ordinal [2][3]
  • One-Hot [2][3]
  • Polynomial Contrast [2][3]
  • Sum Contrast [2][3]

Supervised:

  • CatBoost [11]
  • Generalized Linear Mixed Model [12]
  • James-Stein Estimator [9]
  • LeaveOneOut [4]
  • M-estimator [7]
  • Target Encoding [7]
  • Weight of Evidence [8]

Installation

The package requires: numpy, statsmodels, and scipy.

To install the package, execute:

$ python setup.py install

or

pip install category_encoders

or

conda install -c conda-forge category_encoders

To install the development version, you may use:

pip install --upgrade git+https://github.com/scikit-learn-contrib/category_encoders

Usage

All of the encoders are fully compatible sklearn transformers, so they can be used in pipelines or in your existing scripts. Supported input formats include numpy arrays and pandas dataframes. If the cols parameter isn't passed, all columns with object or pandas categorical data type will be encoded. Please see the docs for transformer-specific configuration options.

Examples

There are two types of encoders: unsupervised and supervised. An unsupervised example:

from category_encoders import *
import pandas as pd
from sklearn.datasets import load_boston

# prepare some data
bunch = load_boston()
y = bunch.target
X = pd.DataFrame(bunch.data, columns=bunch.feature_names)

# use binary encoding to encode two categorical features
enc = BinaryEncoder(cols=['CHAS', 'RAD']).fit(X)

# transform the dataset
numeric_dataset = enc.transform(X)

And a supervised example:

from category_encoders import *
import pandas as pd
from sklearn.datasets import load_boston

# prepare some data
bunch = load_boston()
y_train = bunch.target[0:250]
y_test = bunch.target[250:506]
X_train = pd.DataFrame(bunch.data[0:250], columns=bunch.feature_names)
X_test = pd.DataFrame(bunch.data[250:506], columns=bunch.feature_names)

# use target encoding to encode two categorical features
enc = TargetEncoder(cols=['CHAS', 'RAD'])

# transform the datasets
training_numeric_dataset = enc.fit_transform(X_train, y_train)
testing_numeric_dataset = enc.transform(X_test)

For the transformation of the training data with the supervised methods, you should use fit_transform() method instead of fit().transform(), because these two methods do not have to generate the same result. The difference can be observed with LeaveOneOut encoder, which performs a nested cross-validation for the training data in fit_transform() method (to decrease over-fitting of the downstream model) but uses all the training data for scoring with transform() method (to get as accurate estimates as possible).

Furthermore, you may benefit from following wrappers:

  • PolynomialWrapper, which extends supervised encoders to support polynomial targets
  • NestedCVWrapper, which helps to prevent overfitting

Additional examples and benchmarks can be found in the examples directory.

Contributing

Category encoders is under active development, if you'd like to be involved, we'd love to have you. Check out the CONTRIBUTING.md file or open an issue on the github project to get started.

References

  1. Kilian Weinberger; Anirban Dasgupta; John Langford; Alex Smola; Josh Attenberg (2009). Feature Hashing for Large Scale Multitask Learning. Proc. ICML.
  2. Contrast Coding Systems for categorical variables. UCLA: Statistical Consulting Group. From https://stats.idre.ucla.edu/r/library/r-library-contrast-coding-systems-for-categorical-variables/.
  3. Gregory Carey (2003). Coding Categorical Variables. From http://psych.colorado.edu/~carey/Courses/PSYC5741/handouts/Coding%20Categorical%20Variables%202006-03-03.pdf
  4. Strategies to encode categorical variables with many categories. From https://www.kaggle.com/c/caterpillar-tube-pricing/discussion/15748#143154.
  5. Beyond One-Hot: an exploration of categorical variables. From http://www.willmcginnis.com/2015/11/29/beyond-one-hot-an-exploration-of-categorical-variables/
  6. BaseN Encoding and Grid Search in categorical variables. From http://www.willmcginnis.com/2016/12/18/basen-encoding-grid-search-category_encoders/
  7. Daniele Miccii-Barreca (2001). A Preprocessing Scheme for High-Cardinality Categorical Attributes in Classification and Prediction Problems. SIGKDD Explor. Newsl. 3, 1. From http://dx.doi.org/10.1145/507533.507538
  8. Weight of Evidence (WOE) and Information Value Explained. From https://www.listendata.com/2015/03/weight-of-evidence-woe-and-information.html
  9. Empirical Bayes for multiple sample sizes. From http://chris-said.io/2017/05/03/empirical-bayes-for-multiple-sample-sizes/
  10. Simple Count or Frequency Encoding. From https://www.datacamp.com/community/tutorials/encoding-methodologies
  11. Transforming categorical features to numerical features. From https://tech.yandex.com/catboost/doc/dg/concepts/algorithm-main-stages_cat-to-numberic-docpage/
  12. Andrew Gelman and Jennifer Hill (2006). Data Analysis Using Regression and Multilevel/Hierarchical Models. From https://faculty.psau.edu.sa/filedownload/doc-12-pdf-a1997d0d31f84d13c1cdc44ac39a8f2c-original.pdf

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