An easy way to calculate CCBHC measurements.
Project description
CCBHC Measurements
Table of Contents
- Purpose
- Currently Supported Measurements
- Code Demonstration
- De-panda-cies
- License
- Installation
- Contributors
- Contributions and Discussions
Purpose
The goal of this package is to simplify the process for calculating CCBHC measurements for all CCBHCs. It does this by taking in all the relevant data for a measurement and outputing whether the data meets the measurements' criteria. Here's the DEP-REM-6 as an example:
Click here for the more detailed DEP-REM-6 example pdf
1. Data Processing
Our code is simple:
- Import the Measurement you want to calculate.
- Give it the required data (downloaded excel reports from your EHR, query data from SQL, or whatever)
- Run
get_all_submeasures(). Under the hood,get_all_submeasures()determines which data meets the Measurments criteria and which does not. - Export your data to your preferred tool for analysis. If you want to keep it in pandas, you already have it. If you want to use Excel, or Power BI, you can export it there as well!
2. Dashboard Display
We've also created a base Power BI file as a foundation for a dashboard. Check out the dashboard folder here.
Currently Supported Measurements
- DEP REM 6 - Depression Remission at Six Months
- ASC - Preventive Care and Screening: Unhealthy Alcohol Use: Screening & Brief Counseling
- ASC Detailed Data Input and Output Diagram
- [ASC README][SDOH Submeasure 1 README]
The definition for these Measurements can be found at https://www.samhsa.gov/sites/default/files/ccbhc-quality-measures-technical-specifications-manual.pdf
At the moment we only have these Measurements, but we plan on releasing a new Measurement every two weeks.
Code Demonstration
This is a basic demonstration for the Dep-Rem-6 Measurement, see here for more in depth demonstrations
import pandas as pd
import ccbhc_measurements as ccbhc
- Step 1: Load in the data into Pandas Dataframes
all_inclusive_excel_file = r"../file/path/to/Dep Rem Data.xlsx"
phq_data = pd.read_xlsx(all_inclusive_excel_file, sheet_name = "phq9")
diagnosis_data = pd.read_xlsx(all_inclusive_excel_file, sheet_name = "diagnosis")
demographic_data = pd.read_xlsx(all_inclusive_excel_file, sheet_name = "demographic")
insurance_data = pd.read_xlsx(all_inclusive_excel_file, sheet_name = "insurance")
- Step 2: Ensure that the dataframes follows the correct schema
Dep Rem 6 Required Data Input and Output Diagram
phq_data = phq_data[["patient_id","patient_DOB","encounter_id","encounter_datetime","total_score"]].copy()
diagnosis_data = diagnosis_data[["patient_id","encounter_datetime","diagnosis"]].copy()
demographic_data = demographic_data[["patient_id","race","ethnicity"]].copy()
insurance_data = insurance_data[["patient_id","insurance","start_datetime","end_datetime"]].copy()
- Step 3: Calculate Dep-Rem
submeasure_data = [phq_data,diagnosis_data,demographic_data,insurance_data]
measure = ccbhc.Dep_Rem(submeasure_data)
results = measure.get_all_submeasures()
for name, data in results.items():
data.to_excel(name+".xlsx", index=False)
Example Data Output:
| patient_id | patient_measurement_year_id | encounter_id | age | medicaid | numerator | numerator_reason |
|---|---|---|---|---|---|---|
| 1 | 1-2024 | 1 | 18+ | FALSE | TRUE | Has Remission |
| 2 | 1-2025 | 3 | 18+ | FALSE | FALSE | Remission Period not Reached |
| 3 | 3-2024 | 4 | 18+ | FALSE | FALSE | No PHQ-9 Follow Up |
| 4 | 4-2024 | 5 | 18+ | FALSE | FALSE | No Remission |
- Step 4: Create a Dashboard in Power BI (Optional)
We've created an example dashboard in Power BI for easy implementation but feel free to use the analysis tool of your choice. Feel free to download it from the dashboard folder.
De-panda-cies
License
Installation
Binary installers for the latest released version are available at the Python Package Index (PyPI)
# PyPI
pip install ccbhc_measurements
Contributors
- Alex Gursky - Data Engineer
- Max Friedman - Data Engineer
- Yisroel Len - Director of Data Analytics & CCBHC Project Evaluator
Contributions and Discussions
Feel free to add and create you own Measurements. All Measurements should follow this uml and you can use this guide to show you how to do it!
Send us your recomendations, bugs, questions or feedback at agursky@pesachtikvah.com
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