cell2cell 0.4.9

TBD

Inferring cell-cell interactions from transcriptomes with cell2cell

Installation

Create a new conda environment:

conda create -n cell2cell -y python=3.7 jupyter

Activate that environment:

conda activate cell2cell

Then, install cell2cell:

pip install cell2cell

Examples

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• A toy example using the under-the-hood methods of cell2cell is available here. This case allows personalizing the analyses in a higher level, but it may result harder to use.
• A toy example using an Interaction Pipeline for bulk data is available here. An Interaction Pipeline makes cell2cell easier to use.
• A toy example using an Interaction Pipeline for single-cell data is available here. An Interaction Pipeline makes cell2cell easier to use.
• An example of using cell2cell to infer cell-cell interactions across the whole body of C. elegans is available here

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• A capsule containing jupyter notebooks for running Tensor-cell2cell (cell2cell v0.4.2) on datasets of COVID-19 and the embryonic development of C. elegans is available in codeocean.com

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