Functions to manipulate networks and data related to signalling pathways.
Project description
The package cellnopt.core provides tools to manipulate networks and data related
to signalling pathways. It provides I/O functions for SIF, MIDAS, SOP formats
and a convenient graph data structure called CNOGraph.
Here is a simple example that creates a graph and plots it using dot/graphviz::
from cellnopt.core import *
c = CNOGraph()
c.add_reaction("A=B")
c.add_reaction("A+B=C")
c.plotdot()
For a full documentation, see the sphinx documentation in the ./doc directory.
.. plot::
:include-source:
from cellnopt.core import *
c = CNOGraph(cnodata("PKN-ToyMMB.sif"), cnodata("MD-ToyMMB.csv"))
c.expand_and_gates()
to signalling pathways. It provides I/O functions for SIF, MIDAS, SOP formats
and a convenient graph data structure called CNOGraph.
Here is a simple example that creates a graph and plots it using dot/graphviz::
from cellnopt.core import *
c = CNOGraph()
c.add_reaction("A=B")
c.add_reaction("A+B=C")
c.plotdot()
For a full documentation, see the sphinx documentation in the ./doc directory.
.. plot::
:include-source:
from cellnopt.core import *
c = CNOGraph(cnodata("PKN-ToyMMB.sif"), cnodata("MD-ToyMMB.csv"))
c.expand_and_gates()
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cellnopt.core-0.4.3.tar.gz
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