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30 projects

sequana-fastqc

Last released on

A fastqc pipeline from sequana project.

bioservices

Last released on

Access to Biological Web Services from Python

colormap

Last released on

Utilities to ease manipulation of matplotlib colormaps and color codecs (e.g., hex2rgb)

sequana-demultiplex

Last released on

Pipeline that runs bcl2fastq and creates additional plots within a Snakemake workflow

sequana-variant-calling

Last released on

A variant calling pipeline to analyse sequencing Illumina data

sequana-mapper

Last released on

A simple mapper to map reads onto a reference. This is useful for quick QCs and also secondary analysis

sequana-rnaseq

Last released on

A RNAseq pipeline from raw reads to feature counts

spectrum

Last released on

Spectrum Analysis Tools

fitter

Last released on

A tool to fit data to many distributions and best one(s)

sequana-revcomp

Last released on

reverse complement a set of FastQ files

sequana-quality-control

Last released on

A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix), performs fastqc, adapter cleaning and trimming and checks for contaminants

sequana-denovo

Last released on

Denovo Assembly from FASTQ files

sequana-coverage

Last released on

Parallelise version of sequana_coverage standalone application.

bioconvert

Last released on

convert between bioinformatics formats

easydev

Last released on

Common utilities to ease the development of Python packages

sequana

Last released on

A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis

biokit

Last released on

Access to Biological Web Services from Python

gdsctools

Last released on

Set of tools and pipelines to analyse GDSC data (cancerrxgene.org)

reports

Last released on

Quickly create HTML reports using a set of JINJA templates

dreamtools

Last released on

Scoring functions for the DREAM / SAGE challenges

pypiview

Last released on

Utility to visualise the number of downloads of package(s) available on Pypi website

cno

Last released on

CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.

msdas

Last released on

Put a short description here

cellnopt.core

Last released on

Functions to manipulate networks and data related to signalling pathways.

browse

Last released on

Open a web page in a browser, as simple as that...

cellnopt.data

Last released on

data and model repository for http://www.cellnopt.org project

pymeigo

Last released on

Python wrapper of MEIGOR, a R optimisation package (http://www.iim.csic.es/~gingproc/meigo.html).

cellnopt.admin

Last released on

Administrative tools used to manage cellnopt software (python and R)

rtools

Last released on

utilities to ease manipulation of R packages using rpy2.

cellnopt.wrapper

Last released on

CellNOpt R packages wrapper and utilities

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