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48 projects

fitter

Last released

A tool to fit data to many distributions and get the best one(s)

sequana_pipetools

Last released

A set of tools to help building or using Sequana pipelines

easydev

Last released

Commn utilities to ease development of Python packages

colormap

Last released

Commn utilities to ease development of Python packages

damona

Last released

A manager of singularity containers and their singularity recipes (NGS applications)

sequana

Last released

A set of standalone application and pipelines dedicated to NGS analysis

sequana-rnaseq

Last released

A RNAseq pipeline from raw reads to feature counts

sequana-fastqc

Last released

A multi-sample fastqc pipeline from Sequana project

sequana-mapper

Last released

A multi-sample mapper to map reads onto a reference

sequana-variant-calling

Last released

A multi-sample variant calling pipeline

versionix

Last released

Get version of any tools

sequana-demultiplex

Last released

Pipeline that runs bcl2fastq and ease demultiplexing of Sequencing data

sequana-revcomp

Last released

reverse complement a set of FastQ files

sequana-bioconvert

Last released

description: convert NGS format from one to another using bioconvert

sequana-depletion

Last released

A pipeline to deplete reads from a given reference

sequana-ribofinder

Last released

A multi-sample identification of ribosomal content

sequana-multitax

Last released

A multi-sample and multi-databases taxonomic analysis using Kraken

sequana-nanomerge

Last released

Merge barcoded or non barcoded fastq files generated by Nanopore runs

sequana-denovo

Last released

Multi-sample denovo assembly of FastQ sequences (short read)

bioconvert

Last released

convert between bioinformatics formats

sequana-pacbio-qc

Last released

QC on various type of pacbio data

sequana-laa

Last released

Long read amplicon analysis

sequana-multicov

Last released

Parallelise version of sequana_coverage standalone application.

sequanix

Last released

Sequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows

bioservices

Last released

Access to Biological Web Services from Python

mergegi

Last released

Merge MGI fastq files

biosniff

Last released

A sniffer for biological data formats

sequana-downsampling

Last released

downsample NGS data sets

pysalsa

Last released

convert between bioinformatics formats

spectrum

Last released

Spectrum Analysis Tools

sequana-quality-control

Last released

A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix), performs fastqc, adapter cleaning and trimming and checks for contaminants

sequana-sphinxext

Last released

A set of sphinx extension for Sequana pipelines, wrappers and rules

biokit

Last released

Set of tools related to Bioinformatics (e.g., visualisation)

reports

Last released

Quickly create HTML reports using a set of JINJA templates

sequana-merge-flowcells

Last released

Merge FastQ from different projects (flowcells) into single project

sequana-coverage

Last released

Parallelise version of sequana_coverage standalone application.

gdsctools

Last released

Set of tools and pipelines to analyse GDSC data (cancerrxgene.org)

dreamtools

Last released

Scoring functions for the DREAM / SAGE challenges

pypiview

Last released

Utility to visualise the number of downloads of package(s) available on Pypi website

cno

Last released

CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.

msdas

Last released

Put a short description here

cellnopt.core

Last released

Functions to manipulate networks and data related to signalling pathways.

browse

Last released

Open a web page in a browser, as simple as that...

cellnopt.data

Last released

data and model repository for http://www.cellnopt.org project

pymeigo

Last released

Python wrapper of MEIGOR, a R optimisation package (http://www.iim.csic.es/~gingproc/meigo.html).

cellnopt.admin

Last released

Administrative tools used to manage cellnopt software (python and R)

rtools

Last released

utilities to ease manipulation of R packages using rpy2.

cellnopt.wrapper

Last released

CellNOpt R packages wrapper and utilities

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