47 projects
sequana-nanomerge
Merge barcoded or non barcoded fastq files generated by Nanopore runs
sequana-depletion
A short description
sequana-laa
Long read amplicon analysis
sequana-variant-calling
A variant calling pipeline to analyse sequencing Illumina data
sequana-multicov
Parallelise version of sequana_coverage standalone application.
sequana-revcomp
reverse complement a set of FastQ files
sequana-pacbio-qc
QC on various type of pacbio data
sequana-ribofinder
NGS, ribosomal, rRNA, snakemake, sequana
sequana-pipetools
A set of tools to help building or using Sequana pipelines
sequana-mapper
A simple mapper to map reads onto a reference. This is useful for quick QCs and also secondary analysis
sequana-denovo
Denovo Assembly from FASTQ files
sequana-rnaseq
A RNAseq pipeline from raw reads to feature counts
sequana-demultiplex
Pipeline that runs bcl2fastq and creates additional plots within a Snakemake workflow
sequana-fastqc
A fastqc pipeline from sequana project.
sequanix
Sequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows
sequana
A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
damona
A set of NGS singularity recipes, built for you and easily downlable
bioservices
Access to Biological Web Services from Python
sequana-bioconvert
description: convert NGS format from one to another using bioconvert
bioconvert
convert between bioinformatics formats
easydev
Common utilities to ease the development of Python packages
mergegi
Merge MGI fastq files
fitter
A tool to fit data to many distributions and best one(s)
biosniff
A sniffer for biological data formats
sequana-downsampling
downsample NGS data sets
pysalsa
convert between bioinformatics formats
spectrum
Spectrum Analysis Tools
sequana-quality-control
A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix), performs fastqc, adapter cleaning and trimming and checks for contaminants
sequana-sphinxext
A set of sphinx extension for Sequana pipelines, wrappers and rules
colormap
Utilities to ease manipulation of matplotlib colormaps and color codecs (e.g., hex2rgb)
biokit
Set of tools related to Bioinformatics (e.g., visualisation)
reports
Quickly create HTML reports using a set of JINJA templates
sequana-multitax
taxonomy, sequana, kraken, snakemake
sequana-merge-flowcells
Merge FastQ from different projects (flowcells) into single project
sequana-coverage
Parallelise version of sequana_coverage standalone application.
gdsctools
Set of tools and pipelines to analyse GDSC data (cancerrxgene.org)
dreamtools
Scoring functions for the DREAM / SAGE challenges
pypiview
Utility to visualise the number of downloads of package(s) available on Pypi website
cno
CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.
msdas
Put a short description here
cellnopt.core
Functions to manipulate networks and data related to signalling pathways.
browse
Open a web page in a browser, as simple as that...
cellnopt.data
data and model repository for http://www.cellnopt.org project
pymeigo
Python wrapper of MEIGOR, a R optimisation package (http://www.iim.csic.es/~gingproc/meigo.html).
cellnopt.admin
Administrative tools used to manage cellnopt software (python and R)
rtools
utilities to ease manipulation of R packages using rpy2.
cellnopt.wrapper
CellNOpt R packages wrapper and utilities