Skip to main content

convert between bioinformatics formats

Project description

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

https://badge.fury.io/py/bioconvert.svg https://secure.travis-ci.org/bioconvert/bioconvert.png https://coveralls.io/repos/github/bioconvert/bioconvert/badge.svg?branch=master Documentation Status https://img.shields.io/github/issues/bioconvert/bioconvert.svg https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg https://anaconda.org/bioconda/bioconvert/badges/platforms.svg https://anaconda.org/bioconda/bioconvert/badges/installer/conda.svg
contributions:Want to add a convertor ? Please join https://github.com/bioconvert/bioconvert/issues/1
issues:Please use https://github.com/bioconvert/bioconvert/issues

Installation

In order to install bioconvert, you can use pip:

pip install bioconvert

We also provide releases on bioconda (http://bioconda.github.io/):

conda install bioconvert

and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.

Usage

bioconvert fastq2fasta input.fastq output.fasta
bioconvert gz2dsrc input.fq.gz output.dsrc2
bioconvert bam2bed input.bam output.bed
bioconvert --help

Available Converters

https://raw.githubusercontent.com/bioconvert/bioconvert/master/doc/conversion.png

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for bioconvert, version 0.4.3
Filename, size File type Python version Upload date Hashes
Filename, size bioconvert-0.4.3.tar.gz (1.4 MB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page