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convert between bioinformatics formats

Project description

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

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contributions:Want to add a convertor ? Please join https://github.com/bioconvert/bioconvert/issues/1
issues:Please use https://github.com/bioconvert/bioconvert/issues

Installation

In order to install bioconvert, you can use pip:

pip install bioconvert

We also provide releases on bioconda (http://bioconda.github.io/):

conda install bioconvert

and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.

Usage

bioconvert fastq2fasta input.fastq output.fasta
bioconvert gz2dsrc input.fq.gz output.dsrc2
bioconvert bam2bed input.bam output.bed
bioconvert --help

Available Converters

https://raw.githubusercontent.com/bioconvert/bioconvert/master/doc/conversion.png

Project details


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Files for bioconvert, version 0.4.3
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