Skip to main content
Join the official Python Developers Survey 2018 and win valuable prizes: Start the survey!

convert between bioinformatics formats

Project description

Bioconvert is a project to facilitate the interconversion of life science data from one format to another. Documentation Status
note:Bioconvert is tested with Travis for the following Python version: 3.5 and 3.6. Python 2 won’t be provided.
contributions:Want to add a convertor ? Please join
issues:Please use


In order to install bioconvert, you can use pip:

pip install bioconvert

We also provide releases on bioconda (

conda install bioconvert

and Singularity container are available. See for details.


bioconvert input.fastq output.fasta
bioconvert input.fq output.fasta
bioconvert input.mybam output.bed --input-format bam
bioconvert --formats
bioconvert --help

Available Converters

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
bioconvert-0.2.0.tar.gz (1.9 MB) Copy SHA256 hash SHA256 Source None Aug 8, 2018

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page