CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.
|Note:||Cellnopt is tested under Python2.7 and portage to Python3 is on the way|
|Contributions:||Please join cellnopt github project and share your notebooks|
|Issues:||Please use cellnopt issues and bug report|
|Documentation:||Some documentation (mostly API) are also available on pypi|
This is a stable version that contains datasets and tools to manipulate models and data sets used in CellNOpt project. The sub-package cno.io is ready and is a replacement for cellnopt.core package. cno.datasets sub-package is a replacement for cellnopt.data package.
As for the formalisms, pipelines are provided for each formalism and are available in the boolean, ode and fuzzy packages.
|See also:||http://www.cellnopt.org for the context.|
From Pypi / pip:
sudo pip install cno
# Get the source either from http git clone http://github.com/cellnopt/cellnopt.git # or SSH # git clone email@example.com:cellnopt/cellnopt.git cd cellnopt sudo python setup.py install
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