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CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.

Project description


Cellnopt is tested under Python2.7 and portage to Python3 is on the way


Please join cellnopt github project and share your notebooks


Please use cellnopt issues and bug report


Some documentation (mostly API) are also available on pypi

This is a stable version that contains datasets and tools to manipulate models and data sets used in CellNOpt project. The sub-package is ready and is a replacement for cellnopt.core package. cno.datasets sub-package is a replacement for package.

As for the formalisms, pipelines are provided for each formalism and are available in the boolean, ode and fuzzy packages.

See also: for the context.


From Pypi / pip:

sudo pip install cno

From github:

# Get the source either from http
git clone
# or SSH
# git clone
cd cellnopt
sudo python install

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