CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.
Cellnopt is tested under Python2.7 and portage to Python3 is on the way
Please use cellnopt issues and bug report
Some documentation (mostly API) are also available on pypi
This is a stable version that contains datasets and tools to manipulate models and data sets used in CellNOpt project. The sub-package cno.io is ready and is a replacement for cellnopt.core package. cno.datasets sub-package is a replacement for cellnopt.data package.
As for the formalisms, pipelines are provided for each formalism and are available in the boolean, ode and fuzzy packages.
- See also:
http://www.cellnopt.org for the context.
From Pypi / pip:
sudo pip install cno
# Get the source either from http git clone http://github.com/cellnopt/cellnopt.git # or SSH # git clone firstname.lastname@example.org:cellnopt/cellnopt.git cd cellnopt sudo python setup.py install
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