cg
cg stands for Clinical Genomics; a clinical sequencing platform under SciLifeLab
In this context, cg provides the interface between these tools to facilitate automation and other necessary cross-talk. It also exposes some APIs:
- HTTP REST for powering the web portal: clinical.scilifelab.se
- CLI for interactions on the command line.
Contributing
Please check out our guide for contributing to cg
Installation
Cg written in Python 3.9+ and is available on the Python Package Index (PyPI).
pip install cg
If you would like to install the latest development version, use poetry.
git clone https://github.com/Clinical-Genomics/cg
cd cg
poetry install
For development, use poetry install --all-extras to install development dependencies.
Release files for cg 88.11.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cg-88.11.0.tar.gz | 713.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cg-88.11.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.8 MB
Release files / cg-88.11.0.tar.gz
| Download URL | cg-88.11.0.tar.gz |
|---|---|
| Size | 713.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c8769299496cd7341c50eede2c7e5b8268bebcfa4fd59ddb844c75cae00fb0ae
|
|
BLAKE2b-256 checksum How to use checksums |
f70b06e5d68475d57c5eb4c4f2fb29cb89461e1ceb89b5fad40fb087f9f12cb2
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/2.5.1 CPython/3.11.16 Linux/6.17.0-1022-azure
|
Release files / cg-88.11.0-py3-none-any.whl
| Download URL | cg-88.11.0-py3-none-any.whl |
|---|---|
| Size | 1.1 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
787392c301228b324f117654a86aa34aedbbf08242cf5b89e577ee7c686a50b5
|
|
BLAKE2b-256 checksum How to use checksums |
e4f6b76eb78b6c59725d23657b8ff624304fb6642a3c0218aba27483e74a293f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/2.5.1 CPython/3.11.16 Linux/6.17.0-1022-azure
|