cg
cg stands for Clinical Genomics; a clinical sequencing platform under SciLifeLab
In this context, cg provides the interface between these tools to facilitate automation and other necessary cross-talk. It also exposes some APIs:
- HTTP REST for powering the web portal: clinical.scilifelab.se
- CLI for interactions on the command line.
Contributing
Please check out our guide for contributing to cg
Installation
Cg written in Python 3.9+ and is available on the Python Package Index (PyPI).
pip install cg
If you would like to install the latest development version, use poetry.
git clone https://github.com/Clinical-Genomics/cg
cd cg
poetry install
For development, use poetry install --all-extras to install development dependencies.
Release files for cg 88.3.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cg-88.3.1.tar.gz | 704.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cg-88.3.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.8 MB
Release files / cg-88.3.1.tar.gz
| Download URL | cg-88.3.1.tar.gz |
|---|---|
| Size | 704.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/2.4.1 CPython/3.11.15 Linux/6.17.0-1022-azure
|
Release files / cg-88.3.1-py3-none-any.whl
| Download URL | cg-88.3.1-py3-none-any.whl |
|---|---|
| Size | 1.1 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/2.4.1 CPython/3.11.15 Linux/6.17.0-1022-azure
|