Pre-release
This release is a pre-release and may not be stable for production use.
<p align="center">
<a href="http://chanjo.co">
<img height="235"
width="244"
src="https://raw.githubusercontent.com/robinandeer/chanjo/master/assets/chanjo-logo.png"/>
</a>
</p>
# Chanjo [![PyPI version][fury-image]][fury-url] [![Build Status][travis-image]][travis-url]
Coverage analysis for clincal sequencing and beyond (documentation_).
```shell
$ cat intervals.bed
1 10 15 interval-1
2 45 55 interval-2
$ cat intervals.bed | chanjo annotate alignment.bam
#{"sample_id": "bavewira", ...}
1 10 15 interval-1 9.92231 0.97231
2 45 55 interval-2 14.23123 1.0
```
# Documentation
The [redesigned documentation](http://www.chanjo.co) has all the information you want; getting started guide, foolproof installation instructions, and in-depth overviews.
I can specifically recommend the fully [interactive demo](http://www.chanjo.co/en/latest/introduction.html#demo), complete with sample data to get you started right away.
# Installation
Complete instructions are available in the [documentation](http://www.chanjo.co) but installation (*can be*) as simple as running:
```shell
$ pip install chanjo
```
Contributors
-------------
Robin Andeer
Luca Beltrame ([lbeltrame](https://github.com/lbeltrame))
License
--------
MIT
[fury-url]: http://badge.fury.io/py/chanjo
[fury-image]: https://badge.fury.io/py/chanjo.png
[travis-url]: https://travis-ci.org/robinandeer/chanjo
[travis-image]: https://travis-ci.org/robinandeer/chanjo.png?branch=develop
<a href="http://chanjo.co">
<img height="235"
width="244"
src="https://raw.githubusercontent.com/robinandeer/chanjo/master/assets/chanjo-logo.png"/>
</a>
</p>
# Chanjo [![PyPI version][fury-image]][fury-url] [![Build Status][travis-image]][travis-url]
Coverage analysis for clincal sequencing and beyond (documentation_).
```shell
$ cat intervals.bed
1 10 15 interval-1
2 45 55 interval-2
$ cat intervals.bed | chanjo annotate alignment.bam
#{"sample_id": "bavewira", ...}
1 10 15 interval-1 9.92231 0.97231
2 45 55 interval-2 14.23123 1.0
```
# Documentation
The [redesigned documentation](http://www.chanjo.co) has all the information you want; getting started guide, foolproof installation instructions, and in-depth overviews.
I can specifically recommend the fully [interactive demo](http://www.chanjo.co/en/latest/introduction.html#demo), complete with sample data to get you started right away.
# Installation
Complete instructions are available in the [documentation](http://www.chanjo.co) but installation (*can be*) as simple as running:
```shell
$ pip install chanjo
```
Contributors
-------------
Robin Andeer
Luca Beltrame ([lbeltrame](https://github.com/lbeltrame))
License
--------
MIT
[fury-url]: http://badge.fury.io/py/chanjo
[fury-image]: https://badge.fury.io/py/chanjo.png
[travis-url]: https://travis-ci.org/robinandeer/chanjo
[travis-image]: https://travis-ci.org/robinandeer/chanjo.png?branch=develop
3 maintainers
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