chilmesh 1.3.0

Fast 2D mesh library for hydrodynamic domains — Python API with optional C++ acceleration

CHILmesh

Fast 2D mesh processing, smoothing, and analysis for triangular, quadrilateral, and mixed-element meshes. Intended for hydrodynamic domains.

Dominik Mattioli^1†, Ethan Kubatko^2
†Corresponding author | ¹Unaffiliated | ²Ohio State University ()

MATLAB users: This Python library is the actively-developed successor to the original MATLAB codebase. The original (no longer maintained) is at src/@CHILmesh/CHILmesh.m and on

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Table of Contents

• Status & Roadmap
• Why CHILmesh
• Installation
• Quick start
• Features — Performance · Smoothing · Backends · Engine · Examples · CLI
• Citation
• Contributing · Documentation · License

Status & Roadmap

Current status (June 2026): Stable and actively-maintained. C++ half-edge backend (up to ~15× faster on full init); bit-identical output verified; 36 cross-backend equivalence tests; fort.14 + .2dm + fort.13 I/O; mixed-element support; full mesh-mutation API (split/swap/merge/collapse, #94); lazy header-only summary().

• Now: Pre-built binary wheels (cibuildwheel, manylinux/macOS/Windows); Rust skeletonization completion (#163).
• Next: performance optimization; parallelization; conda-forge packaging; mkdocs API site; native .chil file format
• Future: formal integration within a unified ecosystem including and

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Why CHILmesh

The stable backbone for hydrodynamic mesh generation & tooling.

• Pythonic API — from chilmesh import Mesh; backwards-compatible CHILmesh alias preserved.
• C++ acceleration, bit-identical output — half-edge extension is up to ~15× faster than pure Python on full init (8.6× on the 272k-element ENPAC mesh below), verified bit-for-bit by 36 cross-backend equivalence tests.
• One interface for all topologies — triangles, quadrilaterals, and mixed meshes share the same call surface.
• Stable v1.x API — downstream projects can pin chilmesh>=1.0,<2.

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Installation

pip install chilmesh                        # PyPI
uv pip install chilmesh                     # uv
conda install -c conda-forge chilmesh       # conda-forge (pending)
pip install -e .                            # from source

Backends & the PyPI wheel. The published PyPI wheel is currently pure-Python — it does not bundle the compiled C++/Rust extensions, so a plain pip install chilmesh runs the (correct, but slower) Python backend and chilmesh.backend_info() reports available: ['python']. The C++/Rust speedups advertised below require a source build of the extension (pip install ./src/chilmesh_cpp with a C++ toolchain; cargo build --release in src/chilmesh_core for Rust). Pre-built binary wheels are tracked in #229.

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Quick Start

from chilmesh import Mesh

mesh = Mesh.read_from_fort14("ocean.14")
mesh.smooth_mesh(method="fem", acknowledge_change=True)
quality, angles, stats = mesh.elem_quality()
mesh.plot_quality()

The legacy chilmesh.CHILmesh import is preserved for backward compatibility. Built-in fixtures live at chilmesh.examples.{annulus, donut, block_o, structured}(). See examples/ for runnable scripts.

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Features

• Fast — C++ backend full-inits the 531,680-element ENPAC2003 mesh in ~1.4 s — 8.6× over pure Python (up to ~15× on smaller meshes)
• Mixed-element — triangles, quads, and mixed meshes share one API
• Smoothing — Balendran direct FEM, Zhou-Shimada angle-based, and ADMESH Spring-Based Truss
• Analysis — element quality, interior angles, layer-based decomposition (layerize)
• I/O — ADCIRC .fort.14 and SMS Aquaveo .2dm read/write
• Spatial queries — point-in-element, k-nearest vertices, radius search at O(log n)
• Mesh alterations — advancing-front element addition (add_advancing_front_element), coordinate moves; full mutation suite tracked in #94
• Valence integration — from_admesh_domain() adapter

Performance

Reference workload: EasternPacific_ENPAC2003 — 272,913 vertices · 531,680 elements · 75 layers, from the Valence registry. Medians of 3 runs, single machine, chilmesh 1.2.2.

Stage	MATLAB (Octave) ‡	Python	C++	Rust
Fast init (adj, no layerize)	2.738 s	6.454 s	0.769 s	tbd
Layerize only	12.771 s	5.814 s	0.669 s	tbd
Full init (adj + layerize)	16.677 s	12.300 s	1.438 s	tbd
Quality (signed area)	75 ms	51 ms	7 ms	tbd

Like-for-like: every backend runs the same operation on the same in-memory arrays. No fort.14 parse, signed-area quality. All resolve n_layers = 75; Python↔C++ layers are bit-identical (test_backend_equivalence.py).

• C++ leads every stage — full init 8.6× over Python, 11.6× over Octave.
• Octave builds adjacency 2.4× faster than Python — sparse()-accumulated, in compiled built-ins.
• Python layerizes 2.2× faster than Octave — ~26% ahead on full init overall.
• Rust — skeletonization now matches Python on n_layers, layer-member sets (OE/IE/OV/IV), per-layer bEdgeIDs (full-mesh edge IDs, ascending), full-mesh Edge2Vert/Vert2Edge ordering, and signed areas — verified by the rust-equivalence CI job across all four fixtures incl. block_o (#163); only perf timings (tbd) remain open.

‡ Octave 8.4, interpreter. Times are in-memory compute only — fort.14 parse and rendering excluded. Machine-dependent. Full method: docs/BENCHMARK.md.

_{Figure 1. Scale demo on EasternPacific_ENPAC2003 (272,913 vertices · 531,680 elements). plot_quality() renders per-element skew quality; plot_quality_histogram() emits the matched-colormap distribution beneath. Reproduce: python scripts/generate_enpac_showcase.py.}

Full pipeline cost (parse · adjacency · layerize · spatial-index · quality · render — render dominates), the cross-backend layer-parity catalog (557 → 273k vertices), and mesh-quality metrics: docs/BENCHMARK.md. Layerization is distinct from medial axis / skeleton / distance — docs/CONCEPTS.md:

_{Figure 2. Related, not identical — distance is a scalar field; its ridge is the medial axis; the skeleton is a thinned discrete curve; layers are concentric element bands (what CHILmesh layerizes). Full write-up: docs/CONCEPTS.md. Reproduce: python scripts/illustrate_mesh_concepts.py.}

Smoothing

Three algorithms — each preserves boundary nodes, leaves topology unchanged, and accepts mixed-element meshes.

Algorithm	API call	Style	Best for
Balendran direct FEM	smooth_mesh(method='fem')	One-shot sparse solve	General-purpose default; stable on tri/quad/mixed
Zhou-Shimada angle-based	smooth_mesh(method='angle-based')	Iterative, angle-maximising	Difficult mixed meshes where FEM stalls
ADMESH Spring-Based Truss	smooth_mesh(method='sdf', sdf=...)	Spring/force relaxation against SDF	Quality gains with SDF-respecting boundary nodes (triangle-only)

Backends

pip install chilmesh gives you the pure-Python implementation — zero compiled dependencies, runs everywhere, and is the canonical reference every other backend is validated against. The C++ extension is the high-performance opt-in: same algorithms, bit-identical output, up to ~15× faster on full init.

Language	Role	How to get it
Python	Reference implementation — the default	pip install chilmesh
C++	High-performance backend (half-edge) — bit-identical output	pip install ./src/chilmesh_cpp (or bash scripts/build_cpp.sh)
Rust	Experimental (quad-edge); skeletonization reaches full n_layers/layer-member/bEdgeIDs/edge-ordering parity with Python (rust-equivalence CI, all 4 fixtures incl. block_o), perf timings still open — see #163	source build, not recommended yet
MATLAB	Original 2017 implementation, archived & unmaintained	src/@CHILmesh/CHILmesh.m

import chilmesh

chilmesh.backend_info()
# After a source build of the C++ extension:
# {'available': ['cpp', 'python'],
#  'selected': 'cpp',
#  'versions': {'cpp': '0.6.0.dev0', 'python': '1.2.2'}}

PyPI installs are pure-Python. The example above reflects a source build of the C++ extension. A plain pip install chilmesh from PyPI currently ships no compiled extension, so backend_info() reports {'available': ['python'], 'selected': 'python'} (#229). Build from source (pip install ./src/chilmesh_cpp) for the C++ path until pre-built binary wheels land.

Force a specific backend with CHILMESH_BACKEND (python or cpp). When unset, the fastest available is picked. The cpp↔python bit-identity guarantee is gated in CI by the cpp-equivalence job (ubuntu), which builds the extension and runs tests/test_backend_equivalence.py. Pre-built binary wheels (manylinux / macOS / Windows) via cibuildwheel are planned — see docs/ for build-from-source instructions.

Engine

CHILmesh is a graph over the mesh — seven adjacency tables (built once) back O(1) edge lookup, O(n log n) adjacency build, O(n) layerize, and O(log n) spatial queries. The C++ half-edge backend reproduces them bit-for-bit. Full table + complexities: docs/ARCHITECTURE.md.

Examples

python examples/01_quickstart.py        # load, stats, plot
python examples/02_fort14_roundtrip.py  # fort.14 read/write
python examples/03_smoothing.py         # angle-based smoother
python examples/04_spatial_queries.py   # find_element, radius search, k-nearest

CLI

chilmesh info mesh.fort.14                                      # stats
chilmesh convert mesh.2dm mesh.fort.14                         # format conversion
chilmesh smooth mesh.fort.14 -o out.fort.14 --method fem       # smooth in-place
chilmesh plot mesh.fort.14 -o mesh.png --quality               # render

Also available as python -m chilmesh. Each subcommand has --help.

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Documentation

• docs/API.md — full API reference
• docs/BENCHMARK.md — benchmark methodology and raw data
• docs/CONCEPTS.md — distance vs medial axis vs skeleton vs layers (definitions, algorithms, math, synonyms)
• tests/TESTING.md — test guide (pytest markers, local commands)
• examples/ — runnable scripts (quickstart, fort.14 round-trip, smoothing, spatial queries)

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Citation

CHILmesh originated in MATLAB as the data structure backing a skeletonization-driven indirect tri-to-quad conversion heuristic (Mattioli, OSU MSc Thesis, 2017)

@software{mattioli_chilmesh,
  author    = {Mattioli, Dominik O. and Kubatko, Ethan J.},
  title     = {{CHILmesh}: a fast 2D mesh library for triangular,
               quadrilateral, and mixed-element grids},
  year      = {2026},
  publisher = {Zenodo},
  version   = {1.2.2},
  doi       = {10.5281/zenodo.20263854},
  url       = {https://github.com/domattioli/CHILmesh}
}

Thesis source (Mattioli, 2017). Read thesis (PDF)

@mastersthesis{mattioli2017quadmesh,
  author = {Mattioli, Dominik O.},
  title  = {{QuADMESH+}: A Quadrangular ADvanced Mesh Generator
            for Hydrodynamic Models},
  school = {The Ohio State University},
  year   = {2017},
  url    = {http://rave.ohiolink.edu/etdc/view?acc_num=osu1500627779532088}
}

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Contributing

Issues and PRs welcome at github.com/domattioli/CHILmesh. Run pytest -v before opening a PR — see tests/TESTING.md.

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License

Noncommercial / research use only. Licensed under the PolyForm Noncommercial License 1.0.0 with an additional No-AI/ML-training restriction — see LICENSE and .claude/AI-USAGE.md. No commercial use and no use as AI/ML training data without a separate written license. Commercial or AI-training licenses: https://github.com/domattioli