coloc
An implementation of the COLOC method for colocalization of GWAS and/or eQTL signals by Giambartolomei et al.
Installation
pip3 install coloc
or
pip3 install --user coloc
Example usage
from coloc import coloc, print_coloc_result
help(coloc)
print_coloc_result('not colocalized', *coloc([1, 4, 9], [9, 4, 1]))
not colocalized
PP0: [||||| ] [ 0.26540194014704316 ]
PP1: [|||| ] [ 0.21657860877712054 ]
PP2: [|||| ] [ 0.21657860877712054 ]
PP3: [||| ] [ 0.17661198683565493 ]
PP4: [|| ] [ 0.12482885546306076 ]
print_coloc_result('colocalized', *coloc([1, 4, 9], [1, 4, 9]))
colocalized
PP0: [ ] [ 0.0015168270421050444 ]
PP1: [ ] [ 0.001237791593959775 ]
PP2: [ ] [ 0.001237791593959775 ]
PP3: [ ] [ 1.4094001056824932e-05 ]
PP4: [||||||||||||||||||| ] [ 0.9959934957689188 ]
1 maintainer
Metadata
1 maintainer
Release files for coloc 0.4.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| coloc-0.4.2.tar.gz | 4.0 kB | Without provenance | Details for coloc-0.4.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| coloc-0.4.2-py3-none-any.whl | Python 3 | none | any | Details for coloc-0.4.2-py3-none-any.whl |
Total release size: 8.5 kB
Release files / coloc-0.4.2.tar.gz
| Download URL | coloc-0.4.2.tar.gz |
|---|---|
| Size | 4.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a0e2b6c7d0528a4bdc8d91671de45fc01f2e1b004978d5e1272cd42b03519a78
|
|
BLAKE2b-256 checksum How to use checksums |
2652eeb9a7c4da3ad0bc6983112ce14b11dd88d84c555226c19ee4e2a51c8439
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.10
|
Release files / coloc-0.4.2-py3-none-any.whl
| Download URL | coloc-0.4.2-py3-none-any.whl |
|---|---|
| Size | 4.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
4ae10d4e4e99f93828ad8379dc914ce17dd5e480c5f6032883839aa046416b11
|
|
BLAKE2b-256 checksum How to use checksums |
fb1c67e7b832a3bbca68d7861853d8d023f654c6d13c6061ac65e34077e58f95
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.10
|
Security for coloc 0.4.2
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
