Deepcon-package
Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON
How to install DEEPCON package?
pip3 install deepcon
How to test DEEPCON package?
wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/test/1a0tP0.aln
wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/weights-rdd-covariance.hdf5
python3
import deepcon
from deepcon import deepconcovariance
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr")
To print the contact map as image, add the image name as the last parameter (optional)
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr", "1a0tP0.png")
Example contact map as an image:
Python package developed by:
Chase Richards
Email: CNRichards@gmail.com
2 maintainers
Metadata
2 maintainers
Release files for deepcon 0.4.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| deepcon-0.4.0.tar.gz | 27.1 MB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| deepcon-0.4.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 54.1 MB
Release files / deepcon-0.4.0.tar.gz
| Download URL | deepcon-0.4.0.tar.gz |
|---|---|
| Size | 27.1 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.7.3
|
Release files / deepcon-0.4.0-py3-none-any.whl
| Download URL | deepcon-0.4.0-py3-none-any.whl |
|---|---|
| Size | 27.1 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
bb9140b0f72994a5cc3f1bb8316379164d6d63333b54edac3f044ff389c83292
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BLAKE2b-256 checksum How to use checksums |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.7.3
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Security for deepcon 0.4.0
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