deepcon 0.4.0

Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout

Deepcon-package

Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON

How to install DEEPCON package?

pip3 install deepcon

How to test DEEPCON package?

wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/test/1a0tP0.aln

wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/weights-rdd-covariance.hdf5

python3

import deepcon
from deepcon import deepconcovariance
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr")

To print the contact map as image, add the image name as the last parameter (optional)

deepconcovariance.main("1a0tP0.aln","1a0tP0.rr", "1a0tP0.png")

Example contact map as an image:

Python package developed by:

Chase Richards
Email: [e-mail]