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Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout

Project description

Deepcon-package

Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON

How to install DEEPCON package?

pip3 install deepcon

How to test DEEPCON package?

wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/test/1a0tP0.aln
wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/weights-rdd-covariance.hdf5
python3
import deepcon
from deepcon import deepconcovariance
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr")

To print the contact map as image, add the image name as the last parameter (optional)

deepconcovariance.main("1a0tP0.aln","1a0tP0.rr", "1a0tP0.png")

Example contact map as an image:

Python package developed by:

Chase Richards
Email: CNRichards@gmail.com

Project details


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Files for deepcon, version 0.4.0
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