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A simple Django app to conduct web-based blast+ local alignment search.

Project description

### django-blastplus

A simple Django app to conduct web-based homology search with blast+.


#### Requirements

1. Blast+
2. Python 3
3. Django 2.0
4. Biopython

#### Install
```bash
pipenv install
```


#### Download

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#### Quick start

1. Add "blastplus" to your INSTALLED_APPS setting like this::
```
INSTALLED_APPS = (
'blastplus',
)
```
2. Include the polls URLconf in your project urls.py like this::
```
url(r'^blast/', include('blastplus.urls')),
```
3. You can modify some defaults in blastplus.settings

- e.g. modify path to nucleotide database::

```
BLAST_DB_NUCL_LIST = [
{
"name": "sample1",
"path": 'blastplus/sampledata/sample_db1/sample_db',
"desc": "Sample database 1",
"annotated": False, },
{
"name": "sample2",
"path": 'blastplus/sampledata/sample_db2/sample_db2',
"desc": "Sample database 2",
"annotated": False, },
]
```
4. Visit search pages:

- Blastn http://127.0.0.1:8000/blast/blastn

- TBlastn http://127.0.0.1:8000/blast/tblastn

- Blastp http://127.0.0.1:8000/blast/blastp

- Blastx http://127.0.0.1:8000/blast/blastx


Example
-------

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/


Project details


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