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A simple Django app to conduct web-based blast+ local alignment search.

Project description

django-blastplus
================

A simple Django app to conduct web-based homology search with blast+.


Requirements
------------

1. Blast+
2. Python 2.7
3. Django 1.10

::

pip install django

4. Biopython

::

pip install biopython


Download
--------

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Get the latest version of django-blastplus from
https://pypi.python.org/pypi/django-blastplus/


Install
-------

Install with pip

::

pip install django-blastplus

To get the git version do

::

$ git clone https://github.com/michal-stuglik/django-blastplus.git


Quick start
-----------

1. Add "blastplus" to your INSTALLED_APPS setting like this::

INSTALLED_APPS = (

'blastplus',
)

2. Include the polls URLconf in your project urls.py like this::

url(r'^blast/', include('blastplus.urls')),

3. You can modify some defaults in blastplus.settings

- e.g. modify path to nucleotide database::

BLAST_DB_NUCL_LIST = [
{
"name": "sample1",
"path": 'blastplus/sampledata/sample_db1/sample_db',
"desc": "Sample database 1",
"annotated": False, },
{
"name": "sample2",
"path": 'blastplus/sampledata/sample_db2/sample_db2',
"desc": "Sample database 2",
"annotated": False, },
]

4. Visit search pages:

- Blastn http://127.0.0.1:8000/blast/blastn

- TBlastn http://127.0.0.1:8000/blast/tblastn

- Blastp http://127.0.0.1:8000/blast/blastp

- Blastx http://127.0.0.1:8000/blast/blastx


Example
-------

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/

Project details


Release history Release notifications

This version
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0.4.0

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0.3.1

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django-blastplus-0.4.0.tar.gz (384.1 kB) Copy SHA256 hash SHA256 Source None Oct 18, 2016

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