django-blastplus
A simple Django app to conduct web-based homology search with blast+.
Requirements
- Blast+
- Python 3.6+
- Django 3.0
- Biopython
Install
pip install -r requirements/base.txt
Download
Quick start
Add "blastplus" to your INSTALLED_APPS setting like this::
INSTALLED_APPS = (
'blastplus',
)
Include the polls URLconf in your project urls.py like this::
url(r'^blast/', include('blastplus.urls')),
You can modify some defaults in blastplus.settings
- e.g. modify path to nucleotide database::
BLAST_DB_NUCL_LIST = [
{
"name": "sample1",
"path": 'blastplus/sampledata/sample_db1/sample_db',
"desc": "Sample database 1",
"annotated": False, },
{
"name": "sample2",
"path": 'blastplus/sampledata/sample_db2/sample_db2',
"desc": "Sample database 2",
"annotated": False, },
]
Visit search pages:
Example
See our NewtBase portal with django-blastplus app inside. Code newtbase @ github
1 maintainer
Release files for django-blastplus 3.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| django-blastplus-3.0.0.tar.gz | 378.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| django_blastplus-3.0.0-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size:627.7 kB
Release files / django-blastplus-3.0.0.tar.gz
| Download URL | django-blastplus-3.0.0.tar.gz |
|---|---|
| Size | 378.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
3756a1f430ac41ecac4d28b690a0ff61f787061e2120e23d37e542c9bee3a968
|
|
BLAKE2b-256 checksum How to use checksums |
72bbd9e9a1ac1223dfccfd47e04a4f4b83597f14e058daa68bf7ce330efb34c8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/45.1.0 requests-toolbelt/0.9.1 tqdm/4.42.0 CPython/3.7.4
|
Release files / django_blastplus-3.0.0-py2.py3-none-any.whl
| Download URL | django_blastplus-3.0.0-py2.py3-none-any.whl |
|---|---|
| Size | 249.3 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
2b078a52f5ded4641c154ea189b8c1c5d63132f1f711b90e6215f6a3862c4076
|
|
BLAKE2b-256 checksum How to use checksums |
0fb98aa6638c13371a5889d20823c027833681fac53bd558524705d9f663032c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/45.1.0 requests-toolbelt/0.9.1 tqdm/4.42.0 CPython/3.7.4
|
