A simple Django app to conduct web-based blast+ local alignment search.
Project description
django-blastplus
A simple Django app to conduct web-based homology search with blast+.
Requirements
- Blast+
- Python 3.6+
- Django 3.0
- Biopython
Install
pip install -r requirements/base.txt
Download
Quick start
Add "blastplus" to your INSTALLED_APPS setting like this::
INSTALLED_APPS = (
'blastplus',
)
Include the polls URLconf in your project urls.py like this::
url(r'^blast/', include('blastplus.urls')),
You can modify some defaults in blastplus.settings
- e.g. modify path to nucleotide database::
BLAST_DB_NUCL_LIST = [
{
"name": "sample1",
"path": 'blastplus/sampledata/sample_db1/sample_db',
"desc": "Sample database 1",
"annotated": False, },
{
"name": "sample2",
"path": 'blastplus/sampledata/sample_db2/sample_db2',
"desc": "Sample database 2",
"annotated": False, },
]
Visit search pages:
Example
See our NewtBase portal with django-blastplus app inside. Code newtbase @ github
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