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A simple Django app to conduct web-based blast+ local alignment search.

Project description

django-blastplus

A simple Django app to conduct web-based homology search with blast+.

Requirements

  1. Blast+
  2. Python 3
  3. Django 2.0
  4. Biopython

Install

pipenv install

Download

https://landscape.io/github/michal-stuglik/django-blastplus/master http://badge.fury.io/py/django-blastplus https://travis-ci.org/michal-stuglik/django-blastplus https://codeclimate.com/github/michal-stuglik/django-blastplus

Quick start

  1. Add "blastplus" to your INSTALLED_APPS setting like this::
INSTALLED_APPS = (
        'blastplus',
)
  1. Include the polls URLconf in your project urls.py like this::
url(r'^blast/', include('blastplus.urls')),
  1. You can modify some defaults in blastplus.settings

    • e.g. modify path to nucleotide database::
BLAST_DB_NUCL_LIST = [
            {
                "name": "sample1",
                "path": 'blastplus/sampledata/sample_db1/sample_db',
                "desc": "Sample database 1",
                "annotated": False, },
            {
                "name": "sample2",
                "path": 'blastplus/sampledata/sample_db2/sample_db2',
                "desc": "Sample database 2",
                "annotated": False, },
        ]
  1. Visit search pages:

Example

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/

Project details


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