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Project Description
django-blastplus
================

A simple Django app to conduct web-based homology search with blast+.


Requirements
------------

1. Blast+
2. Python 2.7
3. Django 1.10

::

pip install django

4. Biopython

::

pip install biopython


Download
--------

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:target: https://landscape.io/github/michal-stuglik/django-blastplus/master
:alt: Code Health

.. image:: https://badge.fury.io/py/django-blastplus.svg
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:target: https://codeclimate.com/github/michal-stuglik/django-blastplus
:alt: Code Climate

Get the latest version of django-blastplus from
https://pypi.python.org/pypi/django-blastplus/


Install
-------

Install with pip

::

pip install django-blastplus

To get the git version do

::

$ git clone https://github.com/michal-stuglik/django-blastplus.git


Quick start
-----------

1. Add "blastplus" to your INSTALLED_APPS setting like this::

INSTALLED_APPS = (

'blastplus',
)

2. Include the polls URLconf in your project urls.py like this::

url(r'^blast/', include('blastplus.urls')),

3. You can modify some defaults in blastplus.settings

- e.g. modify path to nucleotide database::

BLAST_DB_NUCL_LIST = [
{
"name": "sample1",
"path": 'blastplus/sampledata/sample_db1/sample_db',
"desc": "Sample database 1",
"annotated": False, },
{
"name": "sample2",
"path": 'blastplus/sampledata/sample_db2/sample_db2',
"desc": "Sample database 2",
"annotated": False, },
]

4. Visit search pages:

- Blastn http://127.0.0.1:8000/blast/blastn

- TBlastn http://127.0.0.1:8000/blast/tblastn

- Blastp http://127.0.0.1:8000/blast/blastp

- Blastx http://127.0.0.1:8000/blast/blastx


Example
-------

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/
Release History

Release History

0.4.0

This version

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

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0.3.1

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0.3.0

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0.2.2

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Changelog content for this version goes here.

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
django-blastplus-0.4.0.tar.gz (384.1 kB) Copy SHA256 Checksum SHA256 Source Oct 18, 2016

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