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DNA cloning simulation for restriction based assembly and more

Project description

DNA Cauldron is a Python library to simulate restriction-based assembly operations. Provided the sequences of genetic parts and receptor vectors, DNA Cauldron will compute the assembli(es) that could result from the mix.

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DNA Cauldron was written for Synthetic Biology applications - typically, to predict and validate batches of parts-based assemblies. It is simple to use, plays well with BioPython, can import and export Genbank (it conserves all features), and provides advanced methods such as connector part auto-selection, backbone selection for linear parts, methods to select constructs subsets when dealing with large combinatorial assemblies.

Infos

PIP installation:

pip install dnacauldron

Web documentation:

https://edinburgh-genome-foundry.github.io/DnaCauldron/

Github Page

https://github.com/Edinburgh-Genome-Foundry/DnaCauldron

Live demo

http://cuba.genomefoundry.org/simulate_gg_assemblies

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Cauldron is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
dnacauldron-0.1.6.tar.gz (175.1 kB) Copy SHA256 hash SHA256 Source None Aug 8, 2018

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