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Cloning simulation for DNA assembly (Golden Gate, Gibson...)

Project description

DNA Cauldron provides a generic cloning simulation framework to predict constructs sequences and detect assembly flaws. It can simulate Golden-Gate support, with extra features like enzyme or connector parts autoselection, and other methods like Gibson Assembly, LCR Assembly, BASIC assembly, BioBrick assembly. It supports single and combinatorial assemblies, hierarchical assemblies, and produces nice reports for traceability and troubleshooting.

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Infos

PIP installation:

pip install dnacauldron

Web documentation:

https://edinburgh-genome-foundry.github.io/DnaCauldron/

Github Page

https://github.com/Edinburgh-Genome-Foundry/DnaCauldron

Live demo

http://cuba.genomefoundry.org/simulate_gg_assemblies

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Cauldron is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details


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