Cloning simulation for DNA assembly (Golden Gate, Gibson...)

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  • License Expression: MIT
    SPDX License Expression
  • Author: Zulko
  • Tags DNA , assembly , cloning , simulator , synthetic biology
  • Provides-Extra: reports
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Project description

DNA Cauldron provides a generic cloning simulation framework to predict constructs sequences and detect assembly flaws. It can simulate Golden-Gate, with extra features like enzyme or connector parts autoselection, and other methods like Gibson Assembly, LCR Assembly, BASIC assembly, BioBrick assembly. It supports single and combinatorial assemblies, hierarchical assemblies, and produces nice reports for traceability and troubleshooting.

Infos

PIP installation:

pip install dnacauldron

Web documentation: https://edinburgh-genome-foundry.github.io/DnaCauldron/

Github Page: https://github.com/Edinburgh-Genome-Foundry/DnaCauldron

Live demo: http://cuba.genomefoundry.org/simulate_gg_assemblies

License: MIT

Copyright 2020 Edinburgh Genome Foundry, University of Edinburgh

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Cauldron is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details

Verified details

These details have been verified by PyPI
Project links
GitHub Statistics
Maintainers
Avatar for EdinburghGenomeFoundry from gravatar.com EdinburghGenomeFoundry

Unverified details

These details have not been verified by PyPI
Meta
  • License Expression: MIT
    SPDX License Expression
  • Author: Zulko
  • Tags DNA , assembly , cloning , simulator , synthetic biology
  • Provides-Extra: reports

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This version

2.0.12

2.0.11

2.0.10

2.0.9

2.0.8

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2.0.4

2.0.3

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