ehrdata

Tests Documentation

EHRData is a data framework that comprises a FAIR storage format and a collection of Python libraries for performant access, alignment, and processing of uni- and multi-modal electronic health record datasets. This repository contains the core ehrdata library, which has the EHRData class at its heart. See the ehrapy package for an analysis package that uses ehrdata to enable the analysis of electronic health record datasetes.

Getting started

Please refer to the documentation, in particular, the API documentation.

Disclaimer

ehrdata is under heavy construction, and its API not stable. If you find it potentially interesting for your work, reach out to us via the scverse zulip platform! We can help you using it and will be able to stabilize things you need.

If you have inputs on features, please do not hesitate to open an issue on our issue tracker!

Installation

You need to have Python 3.12 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.

There are several alternative options to install ehrdata:

  1. Install the latest release of ehrdata from PyPI:
pip install ehrdata
  1. Install the latest development version:
pip install git+https://github.com/theislab/ehrdata.git@main

Release notes

See the changelog.

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

Citation

t.b.a

Project links

Data verified by PyPI on Jul 8, 2026
Data provided by the project maintainers, verified at the time the release was uploaded to PyPI.

Key dates

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  • Released:
Newer release available (0.4.0)

Owner

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2 maintainers

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Avatar for eroell from gravatar.com eroell Avatar for zethson from gravatar.com zethson

Credits

Author: Eljas Roellin, Lukas Heumos, Xinyue Zhang

Maintainer: Eljas Roellin

GitHub Statistics

Data verified by PyPI on Jul 8, 2026
The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License expression

Apache-2.0
View SPDX License List

Requires

Python <3.15, >=3.12

Provides Extra

dask dev doc ehrapy lamin test test-core torch vitessce

Classifiers

Report project as malware

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