Utility to search and download Ensembl data such as genome assemblies and gene annotations
Project description
ensembl_assembly
Search and download Ensembl data such as genome assemblies and gene annotations
This program will produce a tabular-like format with the metadata for the genomes matching user criteria. It may also download desired data to a local folder.
Dependencies
- pandas
- easyterm
These can be installed through conda:
conda install pandas
conda install -c mmariotti easyterm
Usage
By default, the program will show information for all available genome assemblies (most recent release). To see options, run with:
ensembl_assembly.py -h
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