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A package for processing FCS files

Project description


A package for processing FCS files.

  • Free software: MIT license


pip install fcsy


Read a fcs file to pandas DataFrame.

from fcsy.fcs import read_fcs

df = read_fcs('input_file')

Read a fcs file with “long name”

df = read_fcs('input_file', name_type='long')

# or only read the names
from fcsy.fcs import read_fcs_names

long_names = read_fcs_names('input_file', name_type='long')

Write a data frame to fcs. df.columns is written to both short and long names of the fcs.

from fcsy.fcs import write_fcs

write_fcs(df, 'output_file')

Write to fcs with “long name”. df.columns and long_names are written to short and long names of the fcs.

write_fcs(df, 'output_file', long_names=['a','b','c'])


This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.


0.1.0 (2018-12-18)

  • First release on PyPI.

Project details

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