fcsy

A package for processing FCS files.

pip install fcsy

Read a fcs file to pandas DataFrame.

import fcsy

df = fcsy.read_fcs('input_file')

Read a fcs file with “long name”

df = fcsy.read_fcs('input_file', name_type='long')

# or only read the names

long_names = fcsy.read_fcs_names('input_file', name_type='long')

Write a data frame to fcs. df.columns is written to both short and long names of the fcs.

fcsy.write_fcs(df, 'output_file')

Write to fcs with “long name”. df.columns and long_names are written to short and long names of the fcs.

fcsy.write_fcs(df, 'output_file', long_names=['a','b','c'])

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.0 (2018-12-18)

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