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Reproducible matplotlib wrapper with mm-precision layouts

Project description

FigRecipe (scitex-plt)

SciTeX

Reproducible scientific figures as first-class objects

PyPI version Documentation Tests License: AGPL-3.0

Full Documentation · pip install figrecipe


Reproducible, editable, publication-ready scientific figures. Part of SciTeX.

SciTeX users: pip install scitex[plt] includes FigRecipe. scitex.plt delegates to figrecipe — they share the same API.

Overview

FigRecipe treats recipe, data, and style as first-class attributes of every figure. This enables data governance and style editing without losing scientific rigor.

FigRecipe: Reproducible Scientific Figures

Created with Diagrams

Styling

FigRecipe provides millimeter-precise control over every visual element. The SCITEX style preset is applied by default, producing publication-ready figures with standard matplotlib plotting.

SCITEX Style Anatomy

Millimeter-based Layout
fig, ax = fr.subplots(
    axes_width_mm=60,
    axes_height_mm=40,
    margin_left_mm=15,
)
Style Presets
fr.load_style("SCITEX")       # Publication defaults
fr.load_style("SCITEX_DARK")  # Dark theme
fr.load_style("MATPLOTLIB")   # Pure Matplotlib

GUI Editor

For precise adjustments, GUI editor is available.

FigRecipe GUI Editor

Migration from Matplotlib

Matplotlib-compatibility

FigRecipe is a drop-in replacement for matplotlib — just change your import:

# Before
import matplotlib.pyplot as plt
fig, ax = plt.subplots()
ax.plot(x, y)
plt.savefig("fig.png")

# After
import figrecipe as fr
fig, ax = fr.subplots()
ax.plot(x, y, id="my_trace")
fr.save(fig, "fig.png")  # → fig.png + fig.yaml + fig_data/

Systematic Migration

scitex-linter detects and auto-fixes matplotlib patterns into mm-based FigRecipe equivalents (check, format, python). It also works as a pre-commit hook, ensuring AI agents follow FigRecipe conventions.

Diagrams

Create publication-quality box-and-arrow diagrams with mm-based coordinates. See Overview for an example output.

Usage & Validation Rules
s = fr.Diagram(title="EEG Analysis Pipeline", width_mm=170, height_mm=100)
s.add_box("raw", "Raw EEG", subtitle="64 ch", emphasis="muted")
s.add_box("filter", "Bandpass Filter", subtitle="0.5-45 Hz", emphasis="primary")
s.add_box("ica", "ICA", subtitle="Artifact removal", emphasis="primary")
s.add_arrow("raw", "filter")
s.add_arrow("filter", "ica")
s.auto_layout(layout="lr", gap_mm=15)

fig, ax = fr.subplots()
ax.diagram(s, id="pipeline")
fr.save(fig, "pipeline.png")

Available shapes: rounded (default), box, stadium, cylinder (database), document (paper), file (folder), codeblock (terminal window). Use node_class for semantic defaults: "code" → codeblock, "input" → cylinder, "claim" → document.

All rules are enforced automatically on render. Errors are collected and reported together:

Rule Check Severity
W Width exceeds 185 mm (double-column max) UserWarning
R1 Container must enclose all children ValueError
R2 No two boxes may overlap ValueError
R3 Container title must clear children (5 mm zone) UserWarning
R4 Box text must fit within padded inner area UserWarning
R5 Text-to-text margin >= 2 mm ValueError
R6 Text-to-edge margin >= 2 mm ValueError
R7 Arrow visible-length ratio >= 90% ValueError
R8 Curved-arrow label on same side as arc ValueError

When validation fails, figures are still saved with a _FAILED suffix for inspection.

Three Interfaces

🐍 Python API

Create and save — standard matplotlib API with auto-recording:

import figrecipe as fr
import numpy as np

fig, ax = fr.subplots()
ax.plot(np.sin(np.linspace(0, 10, 100)), id="sine")
fr.save(fig, "figure.png")  # Saves + validates pixel-identical reproduction

Output:

figure.png                # Publication-ready image
figure.yaml               # Reproducible recipe (validated on save)
figure_data/
  sine.csv                # Plot data (one CSV per trace)

Save / Load Formats — from recipe or bundle:

fr.save(fig, "fig.png")     # fig.png + fig.yaml
fr.save(fig, "fig.zip")     # self-contained zip bundle
fr.load("fig.png")          # reload from any format
Format Save Load
PNG / PDF / SVG
YAML
Directory / ZIP

Reproduce and edit — from recipe or bundle:

fig, ax = fr.reproduce("figure.yaml")
fr.gui(fig)  # Launch visual editor (at http://127.0.0.1:5050 by default)

Compose — multi-panel figures:

fr.compose(
    sources=["panel_a.yaml", "panel_b.yaml"],
    output_path="composed.png",
    layout="horizontal",
)

Composed multi-panel figure

Statistics — significance brackets:

ax.add_stat_annotation(x1=0, x2=1, p_value=0.01, style="stars")

Full API reference

🖥️ CLI Commands
figrecipe --help-recursive            # Show all commands
figrecipe reproduce fig.yaml          # Recreate figure from recipe
figrecipe gui figure.png              # Launch visual editor
figrecipe validate fig.yaml           # Verify pixel-identical reproduction
figrecipe extract fig.yaml            # Extract plotted data as CSV
figrecipe compose a.yaml b.yaml       # Compose multi-panel figure
figrecipe crop figure.png             # Auto-crop whitespace
figrecipe info fig.yaml               # Show recipe metadata

Full CLI reference

🔧 MCP Server — for AI Agents

AI agents can create, compose, and reproduce publication-ready figures autonomously.

Tool Description
plot Create figure from declarative YAML spec
reproduce Recreate figure from recipe
compose Combine panels into multi-panel layout
crop Auto-crop whitespace
info Inspect recipe metadata
validate Verify reproduction fidelity
# Install to Claude Code
figrecipe mcp install

Full MCP specification

47 matplotlib plot types supported

Category Plot Types
Line & Curve plot, step, fill, fill_between, fill_betweenx, errorbar, stackplot, stairs
Scatter & Points scatter
Bar & Categorical bar, barh
Distribution hist, hist2d, boxplot, violinplot, ecdf
2D Image & Matrix imshow, matshow, pcolor, pcolormesh, hexbin, spy
Contour & Surface contour, contourf, tricontour, tricontourf, tripcolor, triplot
Spectral & Signal specgram, psd, csd, cohere, angle_spectrum, magnitude_spectrum, phase_spectrum, acorr, xcorr
Vector & Flow quiver, barbs, streamplot
Special pie, stem, eventplot, loglog, semilogx, semilogy, graph

SciTeX
AGPL-3.0

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