FLExo
Flexible multi-gene exotoxin annotation using machine learning (ML)
🤖 Overview
FLExo (Flexible Locator for Exotoxins) uses a conditional random field (CRF) to identify multi-gene exotoxin and exotoxin-associated genes in prokaryotic (meta)genomes.
🔍 Quickstart
To detect multi-gene exotoxins and exotoxin-associated genes in an assembled prokaryotic (meta)genome:
flexo run -g [fasta] -o [output directory] [options...]
For help/to view all options:
flexo -h
🔧 Installation
FLExo and its dependencies can be installed via pip:
pip install flexo-tool
⚙️ Usage and options
Command structure
flexo run -g [fasta] -o [output directory] [options...]
Required arguments
-g <file>, --genome <file> a genomic file containing one or more
sequences to use as input. Must be in
one of the sequences format supported
by Biopython.
1 maintainer
Metadata
1 maintainer
Release files for flexo-tool 0.2.2
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| flexo_tool-0.2.2.tar.gz | 152.0 kB | Details |
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| flexo_tool-0.2.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 73.7 MB
Release files / flexo_tool-0.2.2.tar.gz
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| Tags | Python 3 |
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