flexo-tool 0.1.0

Fast Locator for Exotoxins.

FLExo

Scalable exotoxin annotation using machine learning (ML)

🤖 Overview

FLExo (Fast Locator for Exotoxins) uses a conditional random field (CRF) to identify exotoxin and exotoxin-associated genes in prokaryotic (meta)genomes.

🔍 Quickstart

To detect exotoxins and exotoxin-associated genes in an assembled prokaryotic (meta)genome:

flexo run -g [fasta] -o [output directory] [options...]

For help/to view all options:

flexo -h

🔧 Installation

FLExo and its dependencies can be installed via pip:

pip install flexo-tool

⚙️ Usage and options

Command structure

flexo run -g [fasta] -o [output directory] [options...]

Required arguments

    -g <file>, --genome <file>    a genomic file containing one or more
                                  sequences to use as input. Must be in
                                  one of the sequences format supported
                                  by Biopython.