flyem-segmentation-pipeline 1.2.1

A package based on traditional segmentation algorithms used to segment a fly retina images.

CS410_FlyEM_PyPi

This repository hosts the segmentation pipeline to segment fly retina images using traditional segmentation algorithms.

Authors

• Prof. Daniel Haehn
• Sai Harshavardhan Reddy Kona
• Nikhila Yadav Lankela
• Varshitha Hantur Dinakar
• Varuni Manjunath
• Kiran Sandilya
• Kunal Jain

Package Installation

Install this python package by executing the following command.

  pip install flyem_segmentation_pipeline

If the above command throws any error, please run the following command and install the dependency packages individually.

pip install flyem_segmentation_pipeling --no-deps

Required Python packages

• numpy

• mahotas

• matplotlib

• scikit-image

  Dependency package issues

All the above-mentioned packages are required to use this package, but due to the version issues with numpy and mahotas, during installation only matplotlib and scikit-image are installed; numpy and mahotas has to be installed separately.