fs.anvilfs 0.2.5

PyFilesystem2 AnVIL plugin

PyFilesystem2 AnVIL plugin

A plugin for representing AnVIL resources in Python environments as a file system; particularly, in an AnVIL-launched Galaxy instances.

Galaxy installation requirements:

• file_sources_conf.yml in the Galaxy config directory with an AnVIL entry:

- doc: <whatever you would like to call it>
  id: <root folder name>
  namespace: <your google billing project == Terra namespace >
  type: anvil
  workspace: <name of the Terra workspace you wish to browse>
  api_url: <OPTIONAL - if not specified default production url will be used>
  on_anvil: <OPTIONAL - (true/false) must be true to manage AnVIL workload identity scopes>
  drs_url: <OPTIONAL - if not specified  default production url will be used>
  writable: <OPTIONAL - (true/false) if not specified plugin will be read-only>

NOTE: doc and id can be any string you choose but type MUST be anvil

• lib/galaxy/files/sources/anvil.py
  • see included anvil.py

Dependency requirements:

• FISS -- (Fi)reCloud (S)ervice (S)elector python library
• Google Cloud Python client library
• Google Cloud SDK
  • configured with AnVIL project
• gs-chunked-io