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PyFilesystem2 AnVIL plugin

Project description

PyFilesystem2 AnVIL plugin

A plugin for representing AnVIL resources in Python environments as a file system; particularly, in an AnVIL-launched Galaxy instances.

Galaxy installation requirements:

  • file_sources_conf.yml in the Galaxy config directory with an AnVIL entry:
- doc: <whatever you would like to call it>
  id: <root folder name>
  namespace: <your google billing project == Terra namespace >
  type: anvil
  workspace: <name of the Terra workspace you wish to browse>
  api_url: <OPTIONAL - if not specified default production url will be used>
  on_anvil: <OPTIONAL - (true/false) must be true to manage AnVIL workload identity scopes>
  drs_url: <OPTIONAL - if not specified  default production url will be used>
  writable: <OPTIONAL - (true/false) if not specified plugin will be read-only>

NOTE: doc and id can be any string you choose but type MUST be anvil

  • lib/galaxy/files/sources/
    • see included

Dependency requirements:

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